Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq23 98.7 2e-15 >seq23 Length=1203155 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| |||| || || | || ||||| | || | ||| || ||||| || || Sbjct 978739 ATACCCCCTCGCAGACGGAGGACCAAATGAAGGGTGGACTCCTTTTGGATATTGTAGTCA 978798 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | ||| |||| ||||| ||||| || || || || |||| ||||||||| || Sbjct 978799 GCAAGCGTTCGACCGTCTTCCAACTGTTTGCCTGCGAAGATCAATCGCTGTTGGTCCGGA 978858 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| ||||| ||||| ||| || || || || || || || || Sbjct 978859 GGGATACCCTCTTTGTCTTGGATTTTGGCTTTCACGTTGTCGATCGTGTCAGAAGACTCG 978918 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAA 172048 || |||||||||||||| || ||||| || Sbjct 978919 ACCTCTAGAGTAATGGTCTTGCCAGTCAA 978947 Score = 87.8 bits (96), Expect = 3e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || |||| || || | || ||||| | |||| ||| || || || ||||| Sbjct 978157 ATGCCTCCTCGGAGACGAAGAACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAATCA 978216 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || || || |||| || | ||| || ||||| ||||| | | |||||| || || Sbjct 978217 GCTAGAGTACGACCGTCTTCAAGTTGCTTTCCAGCGAAAATAAGGCGCTGTTGATCGGGA 978276 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| |||||||| || || || || || || || || || || ||||| Sbjct 978277 GGGATTCCCTCTTTATCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCCGATGATTCA 978336 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGT 172045 ||||||||||| |||||||| || || Sbjct 978337 ACTTCTAGAGTGATGGTTTTGCCGGT 978362 Score = 87.8 bits (96), Expect = 3e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | |||||| || || | || || || | || || || || || || Sbjct 979023 ATACCACCACGAAGTCGCAACACAAGGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCG 979082 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | || |||| |||||||| ||||||||||| || |||| |||||| || || Sbjct 979083 GCCAAGGTACGACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCGCTGTTGATCCGGG 979142 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || || || || || || || || || || Sbjct 979143 GGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACGTTGTCAATGGTGTCAGATGACTCG 979202 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGT 172045 ||||| || || ||||| || ||||| Sbjct 979203 ACTTCCAGGGTGATGGTCTTCCCAGT 979228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135015664600