Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq11 95.1 1e-13 seq28 93.3 5e-13 >seq11 Length=2255697 Score = 95.1 bits (104), Expect = 1e-13 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 1254437 GGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGA 1254496 ||| ||||| | ||||| || | ||||||||||| || |||||||||| | |||| | Sbjct 1134776 GGCTTCGGTAGCAATGCGCTCAAAGATGTCGTTGACGAAAGAGTTCATGATCAACATGGC 1134717 Query 1254497 CTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||| ||||| || ||||||||| ||||| ||||| |||||||| ||| Sbjct 1134716 TTTGTTCGAGATACCGGTGTCGGGGTGGACCTGTTTGAGGACCTTGTAAATG 1134665 >seq28 Length=870612 Score = 93.3 bits (102), Expect = 5e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 ||||| |||||||| || || || || ||| ||| ||| | ||||| |||||| Sbjct 173457 GACAGTATCGGCGGTACAGTAACATGTGTGATCAAGAACTGTCCGACCGGCCTAGGCGAG 173516 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 |||||||| ||||| | || ||| || |||||||| || ||||||| || || ||| Sbjct 173517 CCGTGCTTCGACAAACTGGAAGCCAAACTAGCCCACGCAATCATGTCGATTCCCGCGACC 173576 Query 19167 AAGGGATTCGAGATTGGCAGCGGGTT 19192 || || ||||| ||||| ||||| || Sbjct 173577 AAAGGTTTCGAAATTGGTAGCGGCTT 173602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107132060372579