Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq23 109 5e-19 >seq23 Length=1203155 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 || || ||||| || || | || || ||| | ||||||| | || | || || | Sbjct 977771 ACAGGGAAAACAATCACTTTGGAGGTCGAATCTTCCGACACGATCGACAACGTCAAGGCA 977712 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| ||||| || || ||||| || ||||| ||||||||||||| || Sbjct 977711 AAGATCCATGACAAGGAAGGTATCCCCCCCGACCAGCAACGACTGATCTTTGCCGGAAAG 977652 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||| || ||| | | | || | ||||| |||||||| || ||||| || || ||| Sbjct 977651 CAGCTTGAAGATGGTCGCACCTTGGCGGATTACAACATTCAGAAAGAATCCACTCTTCAC 977592 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 ||||| | || | || ||||| Sbjct 977591 TTGGTTCTCCGTCTCCGTGGAGG 977569 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 24725 CTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAA 24784 || || |||||||| || || | ||||| || || ||||||| | || | || || Sbjct 978070 CTCACAGGTAAAACGATCACTTTGGAAGTTGAGTCCTCCGACACCATTGACAATGTGAAG 978011 Query 24785 CAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGG 24844 ||||| |||||||| || || || || || |||||||| ||| | || || || || Sbjct 978010 GCTAAGATTCAAGACAAGGAGGGTATCCCCCCGGATCAACAGCGTCTCATTTTCGCTGGC 977951 Query 24845 AAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTA 24904 ||||| || || ||| | | | | || | ||||| ||||| ||||||||||| || || Sbjct 977950 AAACAACTTGAAGATGGGCGTACCTTGGCTGATTACAACATCCAAAAGGAATCTACTCTT 977891 Query 24905 CA 24906 || Sbjct 977890 CA 977889 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 24711 TCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAG 24770 ||||| | || | || || || || || || || || ||||| || | | ||||| Sbjct 979245 TCTTTTTCAACAGTCTCACTGGGAAGACCATCACCCTGGAAGTCGAGTCATCTGACACCA 979186 Query 24771 TAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTT 24830 | || | || || ||||| |||||||| ||||| || || || |||||||| || | Sbjct 979185 TTGACAACGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCCCCGGATCAACAGCGAT 979126 Query 24831 TGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAA 24890 |||||||||| || || || |||| || | | | || | || || ||||| |||| Sbjct 979125 TGATCTTTGCTGGTAAGCAATTGGAAGACGGTCGTACCTTGGCCGACTACAACATCCAAA 979066 Query 24891 AGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||| || | ||| | ||||||||| | || || || Sbjct 979065 AGGAATCCACCTTGCACCTTGTGTTGCGACTTCGTGGTGG 979026 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGA-AACGGTAAAACA 24786 || || || || ||||| || || || || | | ||||| | || |||| ||| | Sbjct 978944 ACTGGCAAGACCATTACTCTAGAGGTCGAGTCTTCTGACACGATCGACAACGTGAAAGCC 978885 Query 24787 AAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAA 24846 ||| |||||||||||||| || || ||||| || ||||| || |||||||| || || || Sbjct 978884 AAA-ATCCAAGACAAAGAGGGTATCCCTCCGGACCAACAGCGATTGATCTTCGCAGGCAA 978826 Query 24847 ACAGCTGGAGGA--TTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTA 24904 |||| |||| || |||| | | || | || || || || |||||||| || || || Sbjct 978825 ACAGTTGGAAGACGGTCGA-ACGCTTG-CTGACTACAATATCCAAAAGGAGTCCACCCTT 978768 Query 24905 CACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||| | || |||| || || Sbjct 978767 CATTTGGTCCTCCGTCTGCGAGGGGG 978742 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 24724 GCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAA 24783 ||| ||||| ||||| || || || ||||| ||| | | ||||| | || | || || Sbjct 978366 GCTTACCGGCAAAACCATCACTCTAGAAGTTGAATCATCGGACACCATCGACAACGTGAA 978307 Query 24784 ACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGG 24843 ||||| || || ||||| ||||| |||||||||||||| || | || || || || Sbjct 978306 GGCCAAGATTCAGGATAAAGAGGGAATCCCTCCCGATCAACAGCGCCTTATTTTCGCTGG 978247 Query 24844 GAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACT 24903 || || || || || | | | | ||||| ||||| |||||||| || ||||| Sbjct 978246 AAAGCAACTTGAAGACGGTCGTACTCTAGCTGATTACAACATCCAAAAGGAGTCTACACT 978187 Query 24904 ACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || ||||| | || | || |||||| Sbjct 978186 TCATTTGGTTCTTCGTCTCCGAGGAGGC 978159 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 24725 CTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAA 24784 || || || ||||| || || | || || || || ||||||| | || | || || Sbjct 978656 CTGACTGGCAAAACGATCACTTTGGAGGTGGAGTCCTCCGACACCATTGACAATGTCAAG 978597 Query 24785 CAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGG 24844 || || |||||||| ||||| || ||||| || || || ||| |||||||||| || Sbjct 978596 GCGAAAATTCAAGACAAGGAAGGCATCCCTCCGGACCAGCAGCGTCTGATCTTTGCTGGT 978537 Query 24845 AAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTA 24904 || || || || || | | | | | || || |||||||||||||| || || || Sbjct 978536 AAGCAACTTGAAGACGGCCGCACCCTTGCGGACTACAACATTCAAAAGGAGTCCACCCTT 978477 Query 24905 CACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||| | ||| | ||||| || Sbjct 978476 CACTTGGTTCTCCGACTTCGCGGCGG 978451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897110736360