Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq11 104 4e-16 seq30 102 1e-15 >seq11 Length=2255697 Score = 104 bits (114), Expect = 4e-16 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1485603 GGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGA 1485662 ||| ||||| | ||||| || | ||||||||||| || |||||||||||| |||| | Sbjct 1134776 GGCTTCGGTAGCAATGCGCTCAAAGATGTCGTTGACGAAAGAGTTCATGATCAACATGGC 1134717 Query 1485663 TTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAA 1485712 |||||| ||||| || ||||||||| ||||| ||||| |||||||||| Sbjct 1134716 TTTGTTCGAGATACCGGTGTCGGGGTGGACCTGTTTGAGGACCTTGTAAA 1134667 >seq30 Length=3970159 Score = 102 bits (112), Expect = 1e-15 Identities = 147/207 (71%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200 ||||| | || |||| |||||||||||| |||| || || |||||||| Sbjct 3700486 AAACAGCGTGCTTCGGCTACTTGGACCTCGCCACTGAATCGCTCGATGAGGTTCTCGTTG 3700427 Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 ||||| || || ||||||||| ||||| |||||||| ||||| ||||| |||||| Sbjct 3700426 ACGATCCCATCCGAGGCGGCGAAGAAGGCAAGGACGTGTTTGATGAAGTGTTTCTCGTCA 3700367 Query 796261 TCGCTGAG---CGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTC 796317 | | || | |||||| | | |||| | |||||| | ||||||||| ||| Sbjct 3700366 GAGTTTAGTTTGTTGTCCCAGTCGTGCATGTCCTTGGAGAGGTCAATCTCCTCGGCAGTC 3700307 Query 796318 CAAAAGGAGGCCTCGGCCTTTTTGTAC 796344 |||||||| |||||||| ||||||| Sbjct 3700306 CAAAAGGAAGCCTCGGCGCGTTTGTAC 3700280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916237145413193