Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq23 125 6e-24 >seq23 Length=1203155 Score = 125 bits (138), Expect = 6e-24 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| || ||||| ||||| ||||||||||| |||||||| |||||||| Sbjct 977569 CCTCCACGGAGACGGAGAACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAATCCGCC 977628 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||||| ||| || || || || || ||| | |||| || |||||| || || || Sbjct 977629 AAGGTGCGACCATCTTCAAGCTGCTTTCCGGCAAAGATCAGTCGTTGCTGGTCGGGGGGG 977688 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| || ||||| || | ||| ||||| | || | ||||| ||| ||| || Sbjct 977689 ATACCTTCCTTGTCATGGATCTTTGCCTTGACGTTGTCGATCGTGTCGGAAGATTCGACC 977748 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAG 29766 || | ||| || ||||| || || ||| Sbjct 977749 TCCAAAGTGATTGTTTTCCCTGTCAAG 977775 Score = 122 bits (134), Expect = 7e-23 Identities = 151/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 29563 CCCCTC--AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAA 29620 |||||| | ||| || ||||||||||| ||||| || ||||| || || || || |||| Sbjct 978743 CCCCTCGCAGACGGAGGACCAAATGAAGGGTGGACTCCTTTTGGATATTGTAGTCAGCAA 978802 Query 29621 TGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAA 29680 || ||| || || | |||||||| || | ||||||| || || ||||| || | Sbjct 978803 GCGTTCGACCGTCTTCCAACTGTTTGCCTGCGAAGATCAATCGCTGTTGGTCCGGAGGGA 978862 Query 29681 TACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTT 29740 |||||||||||||||| | ||| ||| || | || | ||||||||| || || | Sbjct 978863 TACCCTCTTTGTCTTGGATTTTGGCTTTCACGTTGTCGATCGTGTCAGAAGACTCGACCT 978922 Query 29741 CAAGAGTTATAGTTTTGCCAGTTAAG 29766 | ||||| || || |||||||| ||| Sbjct 978923 CTAGAGTAATGGTCTTGCCAGTCAAG 978948 Score = 118 bits (130), Expect = 8e-22 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || ||||| ||||| ||||| || ||||||||||| || ||||||| |||||| Sbjct 978463 CGGAGAACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGCAAGGGTGCGGCCG 978522 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || ||||| || |||||| | |||| | ||||| ||||| || || || || ||| Sbjct 978523 TCTTCAAGTTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTG 978582 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| |||||| | |||||| | || | ||||| || || || || | ||| || Sbjct 978583 TCTTG-AATTTTCGCCTTGACATTGTCAATGGTGTCGGAGGACTCCACCTCCAAAGTGAT 978641 Query 29751 AGTTTTGCCAGT 29762 ||||||||||| Sbjct 978642 CGTTTTGCCAGT 978653 Score = 105 bits (116), Expect = 5e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | | ||| || || | |||||| || ||||| ||||| ||||| ||||| || Sbjct 977864 TCCTCCTCGGAGACGGAGTACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGC 977923 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||| || ||| || |||||||||||||| | || | | || |||||||| || Sbjct 977924 CAAGGTACGCCCATCTTCAAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGATCCGGGGG 977983 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 |||||||| |||||||| ||| || | || ||| | || | ||||| || || | Sbjct 977984 GATACCCTCCTTGTCTTG-AATCTTAGCCTTCACATTGTCAATGGTGTCGGAGGACTCAA 978042 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGT 29762 |||| | ||| || ||||| || || Sbjct 978043 CTTCCAAAGTGATCGTTTTACCTGT 978067 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| || ||||||||||| || || || ||||| ||||| ||||| || Sbjct 978160 CCTCCTCGGAGACGAAGAACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAATCAGCT 978219 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| || || ||||| || ||||| | || | | || ||||| || || Sbjct 978220 AGAGTACGACCGTCTTCAAGTTGCTTTCCAGCGAAAATAAGGCGCTGTTGATCGGGAGGG 978279 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || |||||||| || || ||| || | || || | || | ||||| || ||| || Sbjct 978280 ATTCCCTCTTTATCCTG-AATCTTGGCCTTCACGTTGTCGATGGTGTCCGATGATTCAAC 978338 Query 29739 TTCAAGAGTTATAGTTTTGCCAGT 29762 ||| ||||| || |||||||| || Sbjct 978339 TTCTAGAGTGATGGTTTTGCCGGT 978362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385218791547267