Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq23 107 2e-18 >seq23 Length=1203155 Score = 107 bits (118), Expect = 2e-18 Identities = 146/200 (73%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||||||||| || || || ||||| || | | ||| ||| || || Sbjct 978472 AAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGCAAGGGTGCGGCCGTCTTCAAGT 978531 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || | || || ||||||||||| |||||||||||||||||||| ||| Sbjct 978532 TGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTC-TTGAAT 978590 Query 133575 TTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| | ||||| | |||| ||||||| || |||||| || | |||| |||||||| Sbjct 978591 TTTCGCCTTGACATTGTCAATGGTGTCGGAGGACTCCACCTCCAAAGTGATCGTTTTGCC 978650 Query 133634 GGTCAGAGTTTTTACGAAAA 133653 ||||| | ||| |||||| Sbjct 978651 AGTCAGTCTGTTT-CGAAAA 978669 Score = 104 bits (114), Expect = 2e-17 Identities = 130/176 (74%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| |||||||| || |||||||| ||| ||| ||| | || || |||||||| || Sbjct 977599 GTGGATTCTTTCTGAATGTTGTAATCCGCCAAGGTGCGACCA-TCTTCAAGCTGCTTTCC 977657 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || || ||||||||||| ||||| ||||||||||| ||||||| ||| Sbjct 977658 GGCAAAGATCAGTCGTTGCTGGTCGGGGGGGATACCTTCCTTGTCATGGATCTTTGCCTT 977717 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 || | || | |||||||| | || || || | |||| ||||| || |||| Sbjct 977718 GACGTTGTCGATCGTGTCGGAAGATTCGACCTCCAAAGTGATTGTTTTCCCTGTCA 977773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420274279880