Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20]
87 sequences; 66,403,143 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq23 98.7 7e-16
>seq23
Length=1203155
Score = 98.7 bits (108), Expect = 7e-16
Identities = 135/186 (73%), Gaps = 2/186 (1%)
Strand=Plus/Plus
Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600
||||| || || ||| ||| ||||| |||||||| || | || ||||| |||| ||
Sbjct 978469 ACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGCAAGGGTGCGGCCGTCTTCA 978528
Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660
| ||| || || ||||| |||| ||||||||| || | || | ||||| ||||| |
Sbjct 978529 AGTTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCTTGA 978588
Query 33661 ATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719
|||||| || | ||| |||| ||||||| || ||||| || | |||||||||||
Sbjct 978589 ATTTTCGCCTTGA-CATTGTCAATGGTGTCGGAGGACTCCACCTCCAAAGTGATCGTTTT 978647
Query 33720 ACCTGT 33725
|| ||
Sbjct 978648 GCCAGT 978653
Score = 82.4 bits (90), Expect = 5e-11
Identities = 142/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|| |||| | ||| | || | ||| ||||| || ||||| ||||||||||| |
Sbjct 977865 CCTCCTCGGAGACGGAGTACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGCC 977924
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
| || || | || || | |||||| || || ||||| | |||||| ||||| | ||
Sbjct 977925 AAGGTACGCCCATCTTCAAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGATCCGGGGGG 977984
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||| || ||||| ||| || ||| |||| ||| | ||||||| || || ||
Sbjct 977985 ATACCCTCCTTGTCTTGAATCTTAGCCTTC-ACATTGTCAATGGTGTCGGAGGACTCAAC 978043
Query 33702 GTCAACCGTGATCGTTTTACCTGT 33725
|| | |||||||||||||||||
Sbjct 978044 TTCCAAAGTGATCGTTTTACCTGT 978067
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328703651471040
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |