Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq23 116 3e-21 >seq23 Length=1203155 Score = 116 bits (128), Expect = 3e-21 Identities = 130/171 (76%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||||||||| || || | ||| || |||| || || |||||||| ||||| Sbjct 978486 CTCCTTTTGAATGTTGTAGTCCGCAAGGGTGCGGCCGTCTTCAAGTTGCTTACCAGCAAA 978545 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAG 35663 |||| ||||||||||||| ||| | || ||||||| | ||| ||| | ||| | | Sbjct 978546 GATCAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGT-CTTGAATTTTCGCCTTGACAT 978604 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCA 35714 | | | |||||| || |||||||||| ||||||||||| || |||| Sbjct 978605 TGTCAATGGTGTCGGAGGACTCCACCTCCAAAGTGATCGTTTTGCCAGTCA 978655 Score = 107 bits (118), Expect = 2e-18 Identities = 128/171 (75%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || |||||||||||||| |||||||| || | || || |||||||| || ||||| Sbjct 977605 TCTTTCTGAATGTTGTAATCCGCCAAGGTGCGACCATCTTCAAGCTGCTTTCCGGCAAAG 977664 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||||| | || | | |||||||| ||||||| ||| | ||| Sbjct 977665 ATCAGTCGTTGCTGGTCGGGGGGGATACCTTCCTTGTCATGGATCTTTGCCTTGA-CGTT 977723 Query 35666 G-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAA 35715 | | | ||||||| ||||| ||||||| ||||| ||||| || ||||| Sbjct 977724 GTCGATCGTGTCGGAAGATTCGACCTCCAAAGTGATTGTTTTCCCTGTCAA 977774 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | |||||| | || || || |||||||| |||||||| |||||| Sbjct 979026 CCACCACGAAGTCGCAACACAAGGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGCC 979085 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || |||| |||| |||||||| ||||| ||||| ||||| || |||| ||| Sbjct 979086 AAGGTACGACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCGCTGTTGATCCGGGGGA 979145 Query 35630 ACGCTCTCCTTGTC 35643 | | |||||||| Sbjct 979146 ATACCTTCCTTGTC 979159 Score = 89.7 bits (98), Expect = 5e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 |||||||| ||||||||||| |||||||| ||| | || || || || || || || || Sbjct 977901 TCCTTTTGGATGTTGTAATCAGCCAAGGTACGCCCATCTTCAAGTTGTTTGCCAGCGAAA 977960 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | ||||| || |||| || | | ||||||||| ||||| ||||| | | Sbjct 977961 ATGAGACGCTGTTGATCCGGGGGGATACCCTCCTTGTCTTGAATCTTAGCCTTCACATTG 978020 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 | | |||||| || || || |||| |||||||||||||| || Sbjct 978021 TCAATGGTGTCGGAGGACTCAACTTCCAAAGTGATCGTTTTACCTGT 978067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793109761960