Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq23 136 4e-27 >seq23 Length=1203155 Score = 136 bits (150), Expect = 4e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | ||||| | || | ||| || ||||| |||||||||||||||||||| Sbjct 978449 TTCCGCCGCGAAGTCGGAGAACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCG 978508 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 ||| |||| | ||| || || || || || ||||| |||| ||||||||| || || | Sbjct 978509 CAAGGGTGCGGCCGTCTTCAAGTTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAG 978568 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | |||||||| || ||||||||||| ||||| ||| | |||||||| || |||| Sbjct 978569 GGATGCCTTCCTTGTCTTGAATTTTCGCCTTGACATTGTCAATGGTGTCGGAGGACTCCA 978628 Query 134665 CGTCGAGAGTAATGGTTTTACCGGT 134689 | || | ||| || ||||| || || Sbjct 978629 CCTCCAAAGTGATCGTTTTGCCAGT 978653 Score = 125 bits (138), Expect = 7e-24 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 ||||||||||| ||||| | |||||||||||||| |||||||||||| | | ||| || Sbjct 979035 AGTCGCAACACAAGGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGCCAAGGTACGA 979094 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || | || || || ||||| ||||| ||||| ||||| || || || ||||| Sbjct 979095 CCGTCTTCCAATTGCTTACCAGCAAAGATCAATCGCTGTTGATCCGGGGGAATACCTTCC 979154 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || |||||||| || ||||| ||| | ||||| || || || || || || || Sbjct 979155 TTGTCTTGAATCTTGGCCTTGACGTTGTCAATGGTGTCAGATGACTCGACTTCCAGGGTG 979214 Query 134676 ATGGTTTTACCGGT 134689 ||||| || || || Sbjct 979215 ATGGTCTTCCCAGT 979228 Score = 116 bits (128), Expect = 4e-21 Identities = 151/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-G 134543 ||||||||| ||| || | ||||| || || || ||||||||||| |||||||| || | Sbjct 977863 TTCCTCCTCGGAGACGGAGTACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAG 977922 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 |||| ||| | || || || |||||||| || ||||| | |||||| ||||| || Sbjct 977923 CCAA-GGTACGCCCATCTTCAAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGATCCGGG 977981 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || || || || |||||||| || || || ||| | |||||||| || || Sbjct 977982 GGGATACCCTCCTTGTCTTGAATCTTAGCCTTCACATTGTCAATGGTGTCGGAGGACTCA 978041 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGT 134689 || || | ||| || |||||||| || Sbjct 978042 ACTTCCAAAGTGATCGTTTTACCTGT 978067 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCC 134545 ||||| | ||| || | || | ||| || |||||||| || ||||||||||| | |||| Sbjct 977569 CCTCCACGGAGACGGAGAACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAATCCGCC 977628 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || |||| || || || ||||| || || ||||| |||| || ||||| ||||| || Sbjct 977629 AA-GGTGCGACCATCTTCAAGCTGCTTTCCGGCAAAGATCAGTCGTTGCTGGTCGGGGGG 977687 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || || || || ||| ||||| ||| | |||||||| ||||| || Sbjct 977688 GATACCTTCCTTGTCATGGATCTTTGCCTTGACGTTGTCGATCGTGTCGGAAGATTCGAC 977747 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAA 134692 || | ||| || ||||| || || || Sbjct 977748 CTCCAAAGTGATTGTTTTCCCTGTCAA 977774 Score = 113 bits (124), Expect = 5e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || ||||| |||||||| || |||||||| ||| || || ||| || | |||| Sbjct 978766 TGAAGGGTGGACTCCTTTTGGATATTGTAGTCAGCAAGCGTTCGACCGTCTTCCAACTGT 978825 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 |||||||| || ||||| ||||| || || || || || || ||||| ||||| ||||| Sbjct 978826 TTGCCTGCGAAGATCAATCGCTGTTGGTCCGGAGGGATACCCTCTTTGTCTTGGATTTTG 978885 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || ||| | ||||| || || || || || ||||||||||| || || || Sbjct 978886 GCTTTCACGTTGTCGATCGTGTCAGAAGACTCGACCTCTAGAGTAATGGTCTTGCCAGTC 978945 Query 134691 AA 134692 || Sbjct 978946 AA 978947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505397850379240