Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq22 96.9 5e-15 >seq22 Length=1232782 Score = 96.9 bits (106), Expect = 5e-15 Identities = 172/251 (69%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 69778 TTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATA 69837 ||||| | |||| ||||| || | || ||||| || | |||||| || ||||| ||| Sbjct 877825 TTATTGAAAACTCGAAGCATAGGTACGATCCCATTGGAGTAACCATTGGTGCCAGAGATA 877884 Query 69838 TAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAG 69897 ||||| || | || |||||||| | || || || ||||| || || |||||||| Sbjct 877885 TAACTGCCGGTAGCCCGAATATTGTTGATGTGCAGTCCGATTCCACCAGCACTTTTAGAG 877944 Query 69898 ATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTA 69957 || | || ||| |||||| ||||| || || || || || ||| | | | | Sbjct 877945 ATCATTGCGCAAGTTTTCAAGGTGTCGTAAATCCCATCAATTGAGTCAGATTTGCTAGCA 878004 Query 69958 AGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGAT 70017 | | || ||| || | ||| |||| |||||||||||| || | ||| || || Sbjct 878005 ACCAAGAAGCAGGAGGAAAGTTGTGGATGAGGAGTTCCCGCATTGAAAAGTGTCGGTGAG 878064 Query 70018 GCGTGAGTGAA 70028 ||||||||||| Sbjct 878065 GCGTGAGTGAA 878075 Score = 87.8 bits (96), Expect = 2e-12 Identities = 290/443 (65%), Gaps = 10/443 (2%) Strand=Plus/Plus Query 68760 GGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCAT 68819 ||| ||||| || | | || ||| ||| || |||||| || || || || ||||| Sbjct 876613 GGTGTATGGCTCAAAGCACTCGTTAAATCCAAGGATTTGACTCGTCGAGGCTGTCGGCAT 876672 Query 68820 AGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTA-GATGTT 68878 ||| || | ||| | ||| | | |||| || ||| || ||||| | | ||| Sbjct 876673 AGGCGCGAGCAAAAGGGAATTCCGGATACCAGTCGTCTTGACCTTTTCTTTCAAGCTGTC 876732 Query 68879 TCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTAC 68938 ||| ||||| | ||| || || || ||||| | ||| |||| || || || | || Sbjct 876733 -CCACTCCCACAAATCTGAAGGCTTCACGTTCCACATGTCGAATTGGAGGATACCTTGAC 876791 Query 68939 TTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTG 68998 | || ||| || | | || |||||||| || |||| || | |||| | Sbjct 876792 TGGCGGGTGAGCCGGGAAAGGTCTCATAAGGACCCTCCTTGATGGCCAATTCATTTGAGG 876851 Query 68999 CCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAG-ATCTTGTGCTTCT 69057 |||| |||| | | | ||||| ||||||||||| | | ||||| ||||| || || Sbjct 876852 CCTCCAATGAAGCATGATAAAGCGTTTCGAAAATTTCAGTGTTGAGCTTCTTG-GCAGCT 876910 Query 69058 AGACTATCGAATGGATAATGTAAAAGAAT---AAATGCATCTGCCAATCCCTGAACCCCA 69114 | |||||||| || || ||||| || ||||| || | ||| |||||||| Sbjct 876911 GGTGATTCGAATGG-TA--GTTTTAGAATTTGGAAGGCATCGGCTAGTCCTTGAACCCCG 876967 Query 69115 ATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTA 69174 ||||| || || | |||||| | || || ||| || || || | || || ||||| Sbjct 876968 ATACCAATCGGACGGTGTCTCATGTTCGACTTTTTCGCCTCAGGCACCGGGTAGTAATTG 877027 Query 69175 ATATCTATAATTTTATTAAGATT 69197 || || || || |||| ||||| Sbjct 877028 ATGTCGATGATCCTATTCAGATT 877050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908052986680