Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq23 109 5e-19 >seq23 Length=1203155 Score = 109 bits (120), Expect = 5e-19 Identities = 151/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-G 27077 ||||||| || | || | |||||||| | ||||| || ||||| || ||||| || | Sbjct 978158 TGCCTCCTCGGAGACGAAGAACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAATCAG 978217 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 || || || ||||||| || || || || ||| |||| || ||||||||||| || Sbjct 978218 CTAGAGTA-CGACCGTCTTCAAGTTGCTTTCCAGCGAAAATAAGGCGCTGTTGATCGGGA 978276 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | ||||||||||| |||||| |||| | | || | ||||| | | |||| Sbjct 978277 GGGATTCCCTCTTTATCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCCGATGATTCA 978336 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAG 27226 ||||||||||| || | |||||| || || Sbjct 978337 ACTTCTAGAGTGATGGTTTTGCCGGTAAG 978365 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | ||| | ||| | ||||| || ||||| || ||||| || | Sbjct 977865 CCTCCTCGGAGACGGAGTACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGCC 977924 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | ||| | ||||| || ||||| || ||| |||||||||||||||||||||| || Sbjct 977925 AAGGTACGCCCATCTTCAAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGATCCGGGGGG 977984 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| || || ||||| |||| | || | ||||| | || |||||| Sbjct 977985 ATACCCTCCTTGTCTTGAATCTTAGCCTTCACATTGTCAATGGTGTCGGAGGACTCAACT 978044 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAG 27226 || | ||| || | ||| || || || Sbjct 978045 TCCAAAGTGATCGTTTTACCTGTGAG 978070 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || || |||| || | |||||||| | || || || ||||| ||||||||||| || Sbjct 978742 CCCCCTCGCAGACGGAGGACCAAATGAAGGGTGGACTCCTTTTGGATATTGTAGTCAGCA 978801 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 ||| || ||||||| | |||||| || ||| | || | |||||||| ||||| || Sbjct 978802 AGCGTT-CGACCGTCTTCCAACTGTTTGCCTGCGAAGATCAATCGCTGTTGGTCCGGAGG 978860 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||||||| || ||| ||| ||||| | | || | ||||| | | || || Sbjct 978861 GATACCCTCTTTGTCTTGGATTTTGGCTTTCACGTTGTCGATCGTGTCAGAAGACTCGAC 978920 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCA 27225 |||||||| || | ||||| |||| Sbjct 978921 CTCTAGAGTAATGGTCTTGCCAGTCA 978946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424933949436744