Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq22 125 9e-24 >seq22 Length=1232782 Score = 125 bits (138), Expect = 9e-24 Identities = 410/628 (65%), Gaps = 22/628 (4%) Strand=Plus/Plus Query 110720 GTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATT 110779 |||||||| |||||||| || ||| || | |||||| || |||||||| ||||| Sbjct 876614 GTGTATGGCTCAAAGCACTCGTTAAATCCAAGGATTTGACTCGTCGAGGCTGTCGGCATA 876673 Query 110780 GGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCC 110839 || || | |||||| || || | ||| || ||||| ||| || | ||| Sbjct 876674 GGCGCGAGCAAAAGGGAATTCCGGATACCAGTCGTCTTGACCTTTTCTTTCAAGCTGTCC 876733 Query 110840 CAGTCGTAGTTGAGCTT--GGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGG 110897 || || | | || || ||||| |||| ||||||| || || || | ||||| Sbjct 876734 CACTCCCACAA-ATCTGAAGGCTTCACGTTCC-ACATGTCGAATTGGAGGATACCTTGAC 876791 Query 110898 ACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCA--GCCAATTCACAGCT 110955 ||||| || || |||||| ||||| | ||| | ||| | ||||||||| Sbjct 876792 TGGCGGGTGAGCCGGGAAAGGTCTCATAAGGACCCTC--CTTGATGGCCAATTCATTTGA 876849 Query 110956 CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTC 111015 ||||||| || || ||||| | ||||| || || || || | || |||||| | Sbjct 876850 GGCCTCCAATGAAGCATGATAAAGCGTTTCGAAAATTTCAGTGTTGAGCTTCTTGGCAGC 876909 Query 111016 ATCTGAATCAAATGCGTAGCGGCACAAAATA-AATACATCCGCGAGACCTTGAACACCCA 111074 ||| || |||| |||| | || | || |||| || || |||||||| || | Sbjct 876910 TGGTGATTCGAATG-GTAGTTTTAGAATTTGGAAGGCATCGGCTAGTCCTTGAACCCCGA 876968 Query 111075 AACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAAT 111131 |||||| || | ||||| ||| || |||||| ||| |||| || || || ||| Sbjct 876969 TACCAATCGGACGGTGTCTCATGTTCGACTTTTTCGC---CTCAGGCACCGGGTAGTAAT 877025 Query 111132 TTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTT 111191 | |||| |||| | || ||||| | ||| || ||| |||| ||||||||||||| Sbjct 877026 TGATGTCGATGATCCTATTCAGATTATAGGTGACCTCCTTGGTGACTTCATGAAGTTTT- 877084 Query 111192 CATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAAT 111251 | |||| || | | ||| | | | | || |||||||| || || |||| Sbjct 877085 -----TGAAAATTGTATTTACCATCAACAATAAAAGTGGGTAGGGCGATCGAGGCTAAAT 877139 Query 111252 TGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAAC 111311 | ||||||||| || || | | ||| || | ||| || || || | |||||| Sbjct 877140 TACAAACAGCCACTTCGTCGGGGGCAGAGTATTCAATAATCTCCGTGCAAAGGTTGGAGG 877199 Query 111312 TCTTAATCGTCCCCAAATTCTTTTGGTT 111339 || || || || | ||||||||||| Sbjct 877200 ATTTGATGGTTCCGAGGTTCTTTTGGTT 877227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031317015200