Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq23 152 2e-31 seq25 136 1e-26 seq10 102 2e-16 seq41 91.5 4e-13 >seq23 Length=1203155 Score = 152 bits (168), Expect = 2e-31 Identities = 162/214 (76%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| || || || | | ||||| | |||||| |||||||| ||||| || || | Sbjct 978152 TTTGCATGCCTCCTCGGAGACGAAGAACCAAATGAAGTGTAGACTCCTTTTGGATGTTGT 978211 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||||| || || || || ||||||||||| |||||||| || || || || || |||| Sbjct 978212 AATCAGCTAGAGTACGACCGTCTTCAAGTTGCTTTCCAGCGAAAATAAGGCGCTGTTGAT 978271 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | ||||| ||||| |||||||||||||| || || || || || || || | || |||| Sbjct 978272 CGGGAGGGATTCCCTCTTTATCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCCGATG 978331 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 ||||||||| || || | || || ||||| || Sbjct 978332 ATTCAACTTCTAGAGTGATGGTTTTGCCGGTAAG 978365 Score = 141 bits (156), Expect = 3e-28 Identities = 150/197 (76%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| || || || | | || || |||||||||||||| || ||||| || || | Sbjct 977857 TTTGCATTCCTCCTCGGAGACGGAGTACGAGATGAAGAGTAGATTCCTTTTGGATGTTGT 977916 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||||| || || |||||||||||||||||||| ||||| || || ||||| || |||| Sbjct 977917 AATCAGCCAAGGTACGCCCATCTTCAAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGAT 977976 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || || || ||||| ||||| || ||||| ||||| | || || | Sbjct 977977 CCGGGGGGATACCCTCCTTGTCTTGAATCTTAGCCTTCACATTGTCAATGGTGTCGGAGG 978036 Query 140683 GTTCAACTTC--AAGTG 140697 |||||||| ||||| Sbjct 978037 ACTCAACTTCCAAAGTG 978053 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| || || || | || ||||| | ||||| || ||||| |||||||| || | Sbjct 978443 TTTGCATTCCGCCGCGAAGTCGGAGAACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGT 978502 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | || || || ||||||||||| || ||||||||||| ||||| ||||| | Sbjct 978503 AGTCCGCAAGGGTGCGGCCGTCTTCAAGTTGCTTACCAGCAAAGATCAGACGCTGCTGGT 978562 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | ||||| || ||||| || || |||||||| || || ||||| ||||| | || || | Sbjct 978563 CCGGAGGGATGCCTTCCTTGTCTTGAATTTTCGCCTTGACATTGTCAATGGTGTCGGAGG 978622 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || || || | || | || || || || ||| | ||| |||| Sbjct 978623 ACTCCACCTCCAAAGTGATCGTTTTGCCAGTCAGTCTGTTTCGAAAA 978669 Score = 116 bits (128), Expect = 1e-20 Identities = 147/201 (73%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||| ||||| | | ||||| | |||||||| || ||||| ||||| || ||||| | Sbjct 977568 ACCTCCACGGAGACGGAGAACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAATCCGC 977627 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || || || ||||||||||| || ||||| |||||||| || |||||||| || || || Sbjct 977628 CAAGGTGCGACCATCTTCAAGCTGCTTTCCGGCAAAGATCAGTCGTTGCTGGTCGGGGGG 977687 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || ||||| || || || || || || || || || || |||| || || | ||| || Sbjct 977688 GATACCTTCCTTGTCATGGATCTTTGCCTTGACGTTGTCGATCGTGTCGGAAGATTCGAC 977747 Query 140690 TTCAAGTGTAACTGTCTTTCC 140710 || | || | ||| ||||| Sbjct 977748 CTCCAAAGTGATTGT-TTTCC 977767 Score = 116 bits (128), Expect = 1e-20 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | || | ||||| || | || || || ||||| || || | Sbjct 979018 TTTGCATACCACCACGAAGTCGCAACACAAGGTGCAAGGTGGATTCCTTTTGGATGTTGT 979077 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | || || || || ||||| | ||| || ||||||||||| | || || |||| Sbjct 979078 AGTCGGCCAAGGTACGACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCGCTGTTGAT 979137 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| ||||| || || ||||| || || || || || ||||| | ||||||| Sbjct 979138 CCGGGGGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACGTTGTCAATGGTGTCAGATG 979197 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 || ||||| || || | ||||| || || || Sbjct 979198 ACTCGACTTCCAGGGTGATGGTCTTCCCAGTGAG 979231 >seq25 Length=1007441 Score = 136 bits (150), Expect = 1e-26 Identities = 215/308 (70%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 ||||| || ||||| || || || ||||||| ||||| || |||||||| ||| Sbjct 563101 ACTGTCCCCGCCTACTTCAACGACTCCCAGCGACAGGCAACTAAGGATGCTGGTCTGATT 563160 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 || ||||| || ||||| | || ||||| || || || || || || ||||| ||||| Sbjct 563161 GCCGGGTTGAACGTTCTTCGGATCATTAACGAGCCAACCGCAGCTGCTATTGCTTATGGT 563220 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 | || || | || | | || ||| | | ||||| || | || ||||||||| Sbjct 563221 TTGGACAAGAAGACCGTCGGCGAGCGAAACGTCTTGATTTTCGACCTTGGAGGTGGTACT 563280 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 || ||||| || || | || | |||||||| || || || || ||||| || |||||| Sbjct 563281 TTCGATGTCTCCCTCTTGACCATCGAAGAGGGTATCTTCGAGGTCAAAGCTACGGCTGGT 563340 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918 || || || || || || ||||| || ||||| ||||| || || ||||| ||| Sbjct 563341 GACACCCACCTCGGAGGTGAAGACTTCGATAACCGTCTTGTGAATCACTTTGTAGGCGAA 563400 Query 349919 TTTAAGCG 349926 || ||||| Sbjct 563401 TTCAAGCG 563408 Score = 118 bits (130), Expect = 3e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 ||||| || | ||||| || || ||||| |||| ||| |||||||| |||||||| || Sbjct 562552 GGAATTGACCTTGGTACCACCTACTCTTGCGTTGGTGTATGGCAAAACGATCGTGTCGAG 562611 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || ||||| ||||| || || || | || || || || ||||| || || || || | Sbjct 562612 ATCATTGCCAATGACCAGGGAAATCGCACCACCCCGTCTTACGTCGCTTTCACTGACTCA 562671 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 |||||| | ||||||||| | || || || |||| || || || | | || || Sbjct 562672 GAGCGTCTCATTGGTGATGCCGCTAAGAACCAAGTGGCCATGAACCCTCACCACACCGTC 562731 Query 349385 TTTGATGCTAAGCGACTTATTGG 349407 |||||||||||||| || ||||| Sbjct 562732 TTTGATGCTAAGCGCCTCATTGG 562754 Score = 107 bits (118), Expect = 6e-18 Identities = 255/384 (66%), Gaps = 6/384 (2%) Strand=Plus/Plus Query 350269 ATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATC 350328 ||| ||||| || |||||||| ||||| ||||||||||| || ||||| | || | || Sbjct 563892 ATCCATTAACCCCGATGAAGCCGTTGCCTATGGTGCTGCAGTCCAGGCTGCCATCCTCTC 563951 Query 350329 TGGAAATAAGAGTTCT---AAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTC 350385 || | | ||| |||| | || || | || || ||||| | || || || Sbjct 563952 CGGCGACAC---TTCCGAAAAAACCCAAGACCTCCTGCTCCTTGATGTTGCACCCCTCTC 564008 Query 350386 GCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGT 350445 | || | |||||| | |||| || | || ||| || | || | ||||| Sbjct 564009 CATGGGTATCGAAACTGCCGGTGGTGTCTTCACCCCTCTGATCAAGCGGAACACCACTGT 564068 Query 350446 ACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAAT 350505 || || || ||| | | | ||| || |||| || || || ||||| | || || Sbjct 564069 CCCCACCAAGAAGGGCGAGATTTTCTCCACATACGCCGACAACCAGCCTGGTGTGCTGAT 564128 Query 350506 TCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTAC 350565 |||||| | |||||||||||||||||||| || || || || ||| || ||||| Sbjct 564129 TCAAGTCTACGAAGGTGAACGTGCTCGCACAAAGGACAACAACCTACTGGGCAAATTTGA 564188 Query 350566 CCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATAT 350625 || || ||||| ||| ||| | || ||||||||||| || ||| ||||||| | Sbjct 564189 GCTCTCTGGCATTCCCCCAGCCCCTCGCGGTGTTCCTCAGATCGAGGTCACTTTCGACGT 564248 Query 350626 TGATTCAAATGGTATTTTAAATGT 350649 || | || |||||| | ||||| Sbjct 564249 CGACGCCAACGGTATTCTGAATGT 564272 Score = 86.0 bits (94), Expect = 2e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 349961 GCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACC 350020 ||| | ||||| || | ||||| || ||||||||||| ||| ||||||| ||| | | Sbjct 563514 GCAGTTCGTCGTCTGCGCACTGCTTGCGAACGTGCTAAACGTACCTTATCCTCTGCCGCT 563573 Query 350021 CAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACA 350080 |||||||| || || || || ||||| || || | || |||| | || | ||| Sbjct 563574 CAAACCTCGATCGAGATCGACTCTCTCTTCGAAGGTATCGACTTCTACACCTCCCTGACA 563633 Query 350081 CGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAA 350140 ||||| || || ||||| | || ||| || || || || ||||| ||||| ||| Sbjct 563634 CGTGCCCGTTTCGAAGAGCTCTGCCAGGACCTCTTCAGGAAGACTATGGAGCCTGTCGAA 563693 Query 350141 AAAGT 350145 ||||| Sbjct 563694 AAAGT 563698 >seq10 Length=2548121 Score = 102 bits (112), Expect = 2e-16 Identities = 222/329 (67%), Gaps = 10/329 (3%) Strand=Plus/Minus Query 378183 ATCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGT 378242 ||| || ||||||| | |||||| | || || | | || || || ||||| || Sbjct 748335 ATCGTACGTAACCATCACATCTTCCAGAGCCTTTAGCAAACGCCGCTGGATGTAACCGGT 748276 Query 378243 TTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAA 378302 | |||||| ||||||||||| || ||||| | | |||| |||| || |||||||| Sbjct 748275 CTCGGCAGTTTTGACTGCAGTATCGATCAAACCTTCTCTACCAGCCATAGCGTGGAAGAA 748216 Query 378303 TAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGG 378362 || || || || ||||| | | |||| | || | |||||||| | | || Sbjct 748215 GAACTCTTGTGGGGTGAGTCCTCGTAAGTATGAGTTTTCGACAAATCCTCGAGATTCGGG 748156 Query 378363 CGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCG 378422 ||| | ||| | || || |||| ||||| || |||| || || ||||| || || || Sbjct 748155 CGAGTAATCGTCCTTGGTGAAATGCGGTAAGGTTCGATACTTGAAACCATAGGGGATACG 748096 Query 378423 TTTTCCATCAACATTCTGTTGAC---CAAGTGCAGAAACCATTTGAGCAATATT--TAAA 378477 ||| || || ||| |||||| | || ||| || ||| |||| ||||| | || Sbjct 748095 TTTGCCTTCGACAGACTGTTGTCCCACACATGCCGA---CATCTGAGAGATATTGATGAA 748039 Query 378478 TCACTACCTTTAGACCCAGCATTAACCAT 378506 | | |||||||| ||||| ||||||| Sbjct 748038 TGA--GCCTTTAGAGCCAGCTGTAACCAT 748012 >seq41 Length=3786832 Score = 91.5 bits (100), Expect = 4e-13 Identities = 229/347 (66%), Gaps = 12/347 (3%) Strand=Plus/Minus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || || || || || || ||||| || || || |||| || | | || || || || Sbjct 1652902 GCCGTAATCACGGTGCCCGCCTACTTCAACGACTCCCAACGGTTGTCTACCAAGGACGCC 1652843 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || |||||| || || |||| || | || || ||||| ||||| || || || ||| Sbjct 1652842 GGTGCCATTGCTGGCCTAGATGTGCTTCGTATCATCAATGAGCCCACCGCCGCTGCCATT 1652783 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCA---AGa-aaaaaaTA--------TTCTTATT 349777 || ||||| || | || |||||| | ||| |||||| | | || ||| Sbjct 1652782 GCCTATGGTCTCGGCGAAGCTAGTGACAAGAAAGAGAAAAAAGAGCGAACGGTCCTGATT 1652723 Query 349778 TTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTT 349837 || || || || ||||||||||| ||||| ||||| || | ||| | || | || Sbjct 1652722 TTCGACTTGGGAGGTGGTACTTTCGATGTCTCACTCCTTTCCATTGCCGGTGGTGTCTTC 1652663 Query 349838 GAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTC 349897 ||||| || ||||| ||||| || || | || || || || || || || ||| Sbjct 1652662 ACTGTTAAGGCTACTGCCGGTGACACTCACTTGGGAGGCGAGGACTTCGACAACGCGCTC 1652603 Query 349898 GTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAAATTGATAT 349944 || ||| ||| || || || ||||| || |||| |||||||| Sbjct 1652602 CTTGAGCACTTTAAGAACGAGTTCAAGCGAAAAACTAAGATTGATAT 1652556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515252710964861