Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq23 158 1e-33 >seq23 Length=1203155 Score = 158 bits (174), Expect = 1e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || ||||| || || ||| | ||||| ||||| || | ||||| ||| | ||| Sbjct 978656 CTGACTGGCAAAACGATCACTTTGGAGGTGGAGTCCTCCGACACCATTGACAATGTCAAG 978597 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || |||||||| |||||||| || || ||||| |||||||||||||| || ||||||||| Sbjct 978596 GCGAAAATTCAAGACAAGGAAGGCATCCCTCCGGACCAGCAGCGTCTGATCTTTGCTGGT 978537 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 |||||||| || || | || ||||| || ||||| || | |||||||| ||||| ||| Sbjct 978536 AAGCAACTTGAAGACGGCCGCACCCTTGCGGACTACAACATTCAAAAGGAGTCCACCCTT 978477 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || | || | || |||||||| ||| Sbjct 978476 CACTTGGTTCTCCGACTTCGCGGCGGA 978450 Score = 154 bits (170), Expect = 2e-32 Identities = 166/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 27413 TCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCA 27472 ||||| |||| | || || || ||||| || || || || || |||||| ||| | || Sbjct 979245 TCTTTTTCAACAGTCTCACTGGGAAGACCATCACCCTGGAAGTCGAGTCATCTGACACCA 979186 Query 27473 TTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTC 27532 ||| || | ||||| || ||||| |||||||| || ||||| || || || ||||| Sbjct 979185 TTGACAACGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCCCCGGATCAACAGCGAT 979126 Query 27533 TAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAA 27592 | || ||||||||||||||| | || || | ||||||| | || ||||| || |||||| Sbjct 979125 TGATCTTTGCTGGTAAGCAATTGGAAGACGGTCGTACCTTGGCCGACTACAACATCCAAA 979066 Query 27593 AGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| | || || || ||||| ||||| ||||| Sbjct 979065 AGGAATCCACCTTGCACCTTGTGTTGCGACTTCGTGGTGG 979026 Score = 152 bits (168), Expect = 6e-32 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || || || || || ||| | || |||||||| || | ||||| ||| ||||| Sbjct 978070 CTCACAGGTAAAACGATCACTTTGGAAGTTGAGTCCTCCGACACCATTGACAATGTGAAG 978011 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 ||||| ||||| ||||||||||| || || || || || |||||||| ||||| ||||| Sbjct 978010 GCTAAGATTCAAGACAAGGAGGGTATCCCCCCGGATCAACAGCGTCTCATTTTCGCTGGC 977951 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 || ||||| || |||| |||||| | || || || || ||||||||||||| |||||| Sbjct 977950 AAACAACTTGAAGATGGGCGTACCTTGGCTGATTACAACATCCAAAAGGAATCTACTCTT 977891 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||||| || | ||||| || || ||| Sbjct 977890 CATCTCGTACTCCGTCTCCGAGGAGGA 977864 Score = 152 bits (168), Expect = 6e-32 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 27426 GCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAA 27485 |||||||||||| || || ||||| || ||||| ||| || | ||| | || |||| Sbjct 978366 GCTTACCGGCAAAACCATCACTCTAGAAGTTGAATCATCGGACACCATCGACAACGTGAA 978307 Query 27486 GGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGG 27545 ||| || |||||||| || |||||||| ||||| || || ||||| || ||||| ||||| Sbjct 978306 GGCCAAGATTCAGGATAAAGAGGGAATCCCTCCCGATCAACAGCGCCTTATTTTCGCTGG 978247 Query 27546 TAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCT 27605 |||||||| || || | |||||| ||||| || || || |||||||||| || || || Sbjct 978246 AAAGCAACTTGAAGACGGTCGTACTCTAGCTGATTACAACATCCAAAAGGAGTCTACACT 978187 Query 27606 TCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| | || | ||||| || || || Sbjct 978186 TCATTTGGTTCTTCGTCTCCGAGGAGG 978160 Score = 93.3 bits (102), Expect = 5e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || || |||||||| || || || || |||||||| || || || ||||| Sbjct 977717 AAGGCAAAGATCCATGACAAGGAAGGTATCCCCCCCGACCAGCAACGACTGATCTTTGCC 977658 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| || || |||| ||| ||| | || || || || | || || ||||||||| Sbjct 977657 GGAAAGCAGCTTGAAGATGGTCGCACCTTGGCGGATTACAACATTCAGAAAGAATCCACT 977598 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| | || | ||||| || || || Sbjct 977597 CTTCACTTGGTTCTCCGTCTCCGTGGAGG 977569 Score = 89.7 bits (98), Expect = 6e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || |||||||| || ||||| | || || ||||| ||| | || | || | ||| Sbjct 979593 CTCACCGGCAAAACAATTACCTTGGAAGTCGAGTCTTCTGACACTATCGACAACGTCAAG 979534 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTT 27538 ||||||||||| ||||||||||| || |||||||||||||| ||||| |||| Sbjct 979533 GCTAAAATTCAAGACAAGGAGGGCATCCCTCCAGACCAGCAACGTCTTATTT 979482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309779787440