Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq23 118 7e-22 >seq23 Length=1203155 Score = 118 bits (130), Expect = 7e-22 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||| || | ||||| || || ||| ||||||||||||||| || || | | Sbjct 978451 CCGCCGCGAAGTCGGAGAACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGCA 978510 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||||||||| ||||| ||||| || | |||||| |||||||| || Sbjct 978511 AGGGTGCGGCCGTCTTCAAGTTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGG 978570 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||| ||| | || || | ||| ||||| | |||||| Sbjct 978571 ATGCCTTCCTTGTCT-TGAATTTTCGCCTTGACATTGTCAATGGTGTCGGAGGACTCCAC 978629 Query 34659 TTCCACGGTTATCGTTTTACCGGT 34682 |||| || |||||||| || || Sbjct 978630 CTCCAAAGTGATCGTTTTGCCAGT 978653 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | || | ||| ||||| |||||||| ||||| ||||| | Sbjct 977865 CCTCCTCGGAGACGGAGTACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGCC 977924 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || ||| | |||||||||||||| || || || || | ||||||||| ||||| || Sbjct 977925 AAGGTACGCCCATCTTCAAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGATCCGGGGGG 977984 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||| || | || || | ||| ||||| | ||| || Sbjct 977985 ATACCCTCCTTGTCT-TGAATCTTAGCCTTCACATTGTCAATGGTGTCGGAGGACTCAAC 978043 Query 34659 TTCCACGGTTATCGTTTTACCGGT 34682 ||||| || ||||||||||| || Sbjct 978044 TTCCAAAGTGATCGTTTTACCTGT 978067 Score = 98.7 bits (108), Expect = 6e-16 Identities = 115/154 (75%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | |||||||| || ||| ||||||||| || || || || | | Sbjct 978742 CCCCCTCGCAGACGGAGGACCAAATGAAGGGTGGACTCCTTTTGGATATTGTAGTCAGCA 978801 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| ||||||| | ||||| || || || || || |||||||||||||| || Sbjct 978802 AGCGTTCGACCGTCTTCCAACTGTTTGCCTGCGAAGATCAATCGCTGTTGGTCCGGAGGG 978861 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG 34633 | ||||| |||||| ||| ||| | ||| ||| Sbjct 978862 ATACCCTCTTTGTCTTGGAT-TTTGGCTTTCACG 978894 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| ||||| | |||||||| || || ||||||||| ||||| ||||| | Sbjct 978159 GCCTCCTCGGAGACGAAGAACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAATCAGC 978218 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || ||||||||||||| || || || || || | |||||||| || || || Sbjct 978219 TAGAGTACGACCGTCTTCAAGTTGCTTTCCAGCGAAAATAAGGCGCTGTTGATCGGGAGG 978278 Query 34599 CACTCCCTCCTTGTC 34613 | |||||| || || Sbjct 978279 GATTCCCTCTTTATC 978293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729266288271