Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq23 140 3e-28 >seq23 Length=1203155 Score = 140 bits (154), Expect = 3e-28 Identities = 158/209 (76%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 |||| |||||| | |||||||| || || || | || ||| |||| || | || ||| Sbjct 978946 TGACTGGCAAGACCATTACTCTAGAGGTCGAGTCTTCTGACACGATCGACAACGTGAAAG 978887 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 ||||| ||||||||||| || || || || || |||||||| || || | ||| |||| Sbjct 978886 CCAAAATCCAAGACAAAGAGGGTATCCCTCCGGACCAACAGCGATTGATCTTCGCAGGCA 978827 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCC-GATTACAACATTCAAAAGGAGTCGACCTTA 27188 |||| ||||||||| || ||| || || | || ||||| || ||||||||||| ||| | Sbjct 978826 AACAGTTGGAAGACGGT-CGAACGCTTGCTGACTACAATATCCAAAAGGAGTCCACCCTT 978768 Query 27189 CATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| | ||| |||| || || || Sbjct 978767 CATTTGGTCCTCCGTCTGCGAGGGGGTAT 978739 Score = 123 bits (136), Expect = 2e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056 ||| | || | ||| || || ||| | || || || ||||| || | || ||| | ||| Sbjct 979243 TTTTTCAACAGTCTCACTGGGAAGACCATCACCCTGGAAGTCGAGTCATCTGACACCATT 979184 Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116 || | ||||| || ||||||||||| ||||| || || || ||||||||||| || Sbjct 979183 GACAACGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCCCCGGATCAACAGCGATTG 979124 Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176 || | || || || |||||||||||| || ||| | |||| |||||||| |||||| Sbjct 979123 ATCTTTGCTGGTAAGCAATTGGAAGACGGTCGTACCTTGGCCGACTACAACATCCAAAAG 979064 Query 27177 GAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || | || ||||| | || ||||| || Sbjct 979063 GAATCCACCTTGCACCTTGTGTTGCGACTTCGTGGTGGTAT 979023 Score = 120 bits (132), Expect = 3e-22 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 27009 CTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAA 27068 ||||| ||||| | || ||| | || ||||| | |||||| | ||||| | ||||| Sbjct 978656 CTGACTGGCAAAACGATCACTTTGGAGGTGGAGTCCTCCGACACCATTGACAATGTCAAG 978597 Query 27069 CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGC 27128 |||||||||||||| |||||||| || || || || |||||| | || | || || Sbjct 978596 GCGAAAATTCAAGACAAGGAAGGCATCCCTCCGGACCAGCAGCGTCTGATCTTTGCTGGT 978537 Query 27129 AAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTA 27188 || ||| | |||||| | ||| || | || |||||||||||||||||||| ||| | Sbjct 978536 AAGCAACTTGAAGACGGCCGCACCCTTGCGGACTACAACATTCAAAAGGAGTCCACCCTT 978477 Query 27189 CATTTGGTT 27197 || |||||| Sbjct 978476 CACTTGGTT 978468 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27009 CTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAA 27068 || |||||||| | || ||||| ||||| ||| | || ||| | || || | || || Sbjct 978365 CTTACCGGCAAAACCATCACTCTAGAAGTTGAATCATCGGACACCATCGACAACGTGAAG 978306 Query 27069 CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGC 27128 || ||||| || ||||| || || || |||||||||||||| | || | ||| || Sbjct 978305 GCCAAGATTCAGGATAAAGAGGGAATCCCTCCCGATCAACAGCGCCTTATTTTCGCTGGA 978246 Query 27129 AAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTA 27188 || ||| | |||||| || || | | ||||||||||| ||||||||||| || | Sbjct 978245 AAGCAACTTGAAGACGGTCGTACTCTAGCTGATTACAACATCCAAAAGGAGTCTACACTT 978186 Query 27189 CATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||| | ||| | || || ||||| Sbjct 978185 CATTTGGTTCTTCGTCTCCGAGGAGGCAT 978157 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 27024 ATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGAC 27083 || ||| | ||||| || | |||||| | ||||| | || || || ||||||||| Sbjct 978055 ATCACTTTGGAAGTTGAGTCCTCCGACACCATTGACAATGTGAAGGCTAAGATTCAAGAC 977996 Query 27084 AAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143 || || || || || || |||||||||||| | || | ||| ||||||||| | ||||| Sbjct 977995 AAGGAGGGTATCCCCCCGGATCAACAGCGTCTCATTTTCGCTGGCAAACAACTTGAAGAT 977936 Query 27144 AGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 | ||| | | ||||||||||| |||||||| || || | ||| | || | ||| Sbjct 977935 GGGCGTACCTTGGCTGATTACAACATCCAAAAGGAATCTACTCTTCATCTCGTACTCCGT 977876 Query 27204 TTGCGGGGTGGCAT 27217 | || || || || Sbjct 977875 CTCCGAGGAGGAAT 977862 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 |||| || || | || ||| | || || ||| | |||||| |||| || | ||||| Sbjct 977773 TGACAGGGAAAACAATCACTTTGGAGGTCGAATCTTCCGACACGATCGACAACGTCAAGG 977714 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 ||| || || ||||| ||||| || || ||||| || || || | || | ||||| | Sbjct 977713 CAAAGATCCATGACAAGGAAGGTATCCCCCCCGACCAGCAACGACTGATCTTTGCCGGAA 977654 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTAC 27189 | || | ||||| || ||| | | |||||||||||||| || || || || | | Sbjct 977653 AGCAGCTTGAAGATGGTCGCACCTTGGCGGATTACAACATTCAGAAAGAATCCACTCTTC 977594 Query 27190 ATTTGGTTTTGCGTTTGCGGGGTGG 27214 | |||||| | ||| | || || || Sbjct 977593 ACTTGGTTCTCCGTCTCCGTGGAGG 977569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434917927026240