Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20]
87 sequences; 66,403,143 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq23 152 1e-31
>seq23
Length=1203155
Score = 152 bits (168), Expect = 1e-31
Identities = 154/199 (77%), Gaps = 1/199 (1%)
Strand=Plus/Plus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| ||| || | || || | |||||||||||| ||||| || ||||| |||||||| |
Sbjct 977571 TCCACGGAGACGGAGAACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAATCCGCCAA 977630
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
||| | |||||||| |||||||| || || ||||| || ||||| ||||| || || |
Sbjct 977631 GGTGCGACCATCTTCAAGCTGCTTTCCGGCAAAGATCAGTCGTTGCTGGTCGGGGGGGAT 977690
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
||||||||||| ||||||||| || ||||| ||||| ||||| || ||| |||||
Sbjct 977691 ACCTTCCTTGTCATGGATCTTTGCCTTGACGTTGTCGATCGTGTCGGAAGATTCGACCTC 977750
Query 211070 GAGAGTGATCGTCTTTCCC 211088
| |||||| || ||||||
Sbjct 977751 CAAAGTGATTGT-TTTCCC 977768
Score = 145 bits (160), Expect = 2e-29
Identities = 145/188 (77%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | ||||| |||||||| |||||||| || || || ||||| || | || |||
Sbjct 978757 AGGACCAAATGAAGGGTGGACTCCTTTTGGATATTGTAGTCAGCAAGCGTTCGACCGTCT 978816
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||| ||| |||||||||||||| | || |||||||| ||||| | || || |||||
Sbjct 978817 TCCAACTGTTTGCCTGCGAAGATCAATCGCTGTTGGTCCGGAGGGATACCCTCTTTGTCT 978876
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||| || ||||||||| ||||| |||||||| || ||||| ||||| || |||
Sbjct 978877 TGGATTTTGGCTTTCACGTTGTCGATCGTGTCAGAAGACTCGACCTCTAGAGTAATGGTC 978936
Query 211083 TTTCCCGT 211090
|| || ||
Sbjct 978937 TTGCCAGT 978944
Score = 143 bits (158), Expect = 6e-29
Identities = 141/182 (77%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971
||||| || ||||| ||||||||||| ||||| || || || | || ||||| || |||
Sbjct 978184 TGAAGTGTAGACTCCTTTTGGATGTTGTAATCAGCTAGAGTACGACCGTCTTCAAGTTGC 978243
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031
|| || ||||| |||||||| ||||| || ||||| | ||| || || ||||| |||||
Sbjct 978244 TTTCCAGCGAAAATAAGGCGCTGTTGATCGGGAGGGATTCCCTCTTTATCCTGAATCTTG 978303
Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
|||||||| ||||||||||| || |||||| || |||||||| || || || ||
Sbjct 978304 GCCTTCACGTTGTCGATGGTGTCCGATGATTCAACTTCTAGAGTGATGGTTTTGCCGGTA 978363
Query 211092 AG 211093
||
Sbjct 978364 AG 978365
Score = 140 bits (154), Expect = 8e-28
Identities = 151/200 (76%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
||||||| || || | |||||| |||||||| ||||| ||||| || |||||||||||
Sbjct 978457 CGAAGTCGGAGAACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGCAAGGGTG 978516
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| || ||||| || ||||| || || ||||| || || || ||||| ||||| | |||
Sbjct 978517 CGGCCGTCTTCAAGTTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGGATGCCT 978576
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
|||||||| || || || || || || || |||||||| ||| || ||||| | |
Sbjct 978577 TCCTTGTCTTGAATTTTCGCCTTGACATTGTCAATGGTGTCGGAGGACTCCACCTCCAAA 978636
Query 211074 GTGATCGTCTTTCCCGTGAG 211093
|||||||| || || || ||
Sbjct 978637 GTGATCGTTTTGCCAGTCAG 978656
Score = 132 bits (146), Expect = 1e-25
Identities = 144/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || || |||||||| || || ||||||||||| ||||| || | ||| | ||||||
Sbjct 977880 AGTACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGCCAAGGTACGCCCATCT 977939
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || || ||||| ||||| || || || ||||| || || || | || ||||||||
Sbjct 977940 TCAAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGATCCGGGGGGATACCCTCCTTGTCT 977999
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| ||||| || || |||||||| ||| ||||| || | |||||||||
Sbjct 978000 TGAATCTTAGCCTTCACATTGTCAATGGTGTCGGAGGACTCAACTTCCAAAGTGATCGTT 978059
Query 211083 TTTCCCGTGAG 211093
|| || |||||
Sbjct 978060 TTACCTGTGAG 978070
Score = 132 bits (146), Expect = 1e-25
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||||| | |||||||| | ||||| || ||||||||||| || || || | |||
Sbjct 979031 ACGAAGTCGCAACACAAGGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGCCAAGGT 979090
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || ||||||| ||||| || || ||||| | || ||||| || || |||| ||
Sbjct 979091 ACGACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCGCTGTTGATCCGGGGGAATACC 979150
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||| || ||||| || ||||| || ||||||||||| || || || ||
Sbjct 979151 TTCCTTGTCTTGAATCTTGGCCTTGACGTTGTCAATGGTGTCAGATGACTCGACTTCCAG 979210
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
||||| ||||| || |||||| | || | |||
Sbjct 979211 GGTGATGGTCTTCCCAGTGAGACTGTTGAAAAA 979243
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159150707907755
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |