Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq23 152 1e-31 >seq23 Length=1203155 Score = 152 bits (168), Expect = 1e-31 Identities = 154/199 (77%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || | |||||||||||| ||||| || ||||| |||||||| | Sbjct 977571 TCCACGGAGACGGAGAACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAATCCGCCAA 977630 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | |||||||| |||||||| || || ||||| || ||||| ||||| || || | Sbjct 977631 GGTGCGACCATCTTCAAGCTGCTTTCCGGCAAAGATCAGTCGTTGCTGGTCGGGGGGGAT 977690 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||||||||||| ||||||||| || ||||| ||||| ||||| || ||| ||||| Sbjct 977691 ACCTTCCTTGTCATGGATCTTTGCCTTGACGTTGTCGATCGTGTCGGAAGATTCGACCTC 977750 Query 211070 GAGAGTGATCGTCTTTCCC 211088 | |||||| || |||||| Sbjct 977751 CAAAGTGATTGT-TTTCCC 977768 Score = 145 bits (160), Expect = 2e-29 Identities = 145/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||||| |||||||| |||||||| || || || ||||| || | || ||| Sbjct 978757 AGGACCAAATGAAGGGTGGACTCCTTTTGGATATTGTAGTCAGCAAGCGTTCGACCGTCT 978816 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| |||||||||||||| | || |||||||| ||||| | || || ||||| Sbjct 978817 TCCAACTGTTTGCCTGCGAAGATCAATCGCTGTTGGTCCGGAGGGATACCCTCTTTGTCT 978876 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||||||||| ||||| |||||||| || ||||| ||||| || ||| Sbjct 978877 TGGATTTTGGCTTTCACGTTGTCGATCGTGTCAGAAGACTCGACCTCTAGAGTAATGGTC 978936 Query 211083 TTTCCCGT 211090 || || || Sbjct 978937 TTGCCAGT 978944 Score = 143 bits (158), Expect = 6e-29 Identities = 141/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| || ||||| ||||||||||| ||||| || || || | || ||||| || ||| Sbjct 978184 TGAAGTGTAGACTCCTTTTGGATGTTGTAATCAGCTAGAGTACGACCGTCTTCAAGTTGC 978243 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || ||||| |||||||| ||||| || ||||| | ||| || || ||||| ||||| Sbjct 978244 TTTCCAGCGAAAATAAGGCGCTGTTGATCGGGAGGGATTCCCTCTTTATCCTGAATCTTG 978303 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 |||||||| ||||||||||| || |||||| || |||||||| || || || || Sbjct 978304 GCCTTCACGTTGTCGATGGTGTCCGATGATTCAACTTCTAGAGTGATGGTTTTGCCGGTA 978363 Query 211092 AG 211093 || Sbjct 978364 AG 978365 Score = 140 bits (154), Expect = 8e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||||| || || | |||||| |||||||| ||||| ||||| || ||||||||||| Sbjct 978457 CGAAGTCGGAGAACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGCAAGGGTG 978516 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || ||||| || ||||| || || ||||| || || || ||||| ||||| | ||| Sbjct 978517 CGGCCGTCTTCAAGTTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGGATGCCT 978576 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||| || || || || || || || |||||||| ||| || ||||| | | Sbjct 978577 TCCTTGTCTTGAATTTTCGCCTTGACATTGTCAATGGTGTCGGAGGACTCCACCTCCAAA 978636 Query 211074 GTGATCGTCTTTCCCGTGAG 211093 |||||||| || || || || Sbjct 978637 GTGATCGTTTTGCCAGTCAG 978656 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || |||||||| || || ||||||||||| ||||| || | ||| | |||||| Sbjct 977880 AGTACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGCCAAGGTACGCCCATCT 977939 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || ||||| ||||| || || || ||||| || || || | || |||||||| Sbjct 977940 TCAAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGATCCGGGGGGATACCCTCCTTGTCT 977999 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||||| || || |||||||| ||| ||||| || | ||||||||| Sbjct 978000 TGAATCTTAGCCTTCACATTGTCAATGGTGTCGGAGGACTCAACTTCCAAAGTGATCGTT 978059 Query 211083 TTTCCCGTGAG 211093 || || ||||| Sbjct 978060 TTACCTGTGAG 978070 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| | |||||||| | ||||| || ||||||||||| || || || | ||| Sbjct 979031 ACGAAGTCGCAACACAAGGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGCCAAGGT 979090 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || ||||||| ||||| || || ||||| | || ||||| || || |||| || Sbjct 979091 ACGACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCGCTGTTGATCCGGGGGAATACC 979150 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| || ||||| || ||||| || ||||||||||| || || || || Sbjct 979151 TTCCTTGTCTTGAATCTTGGCCTTGACGTTGTCAATGGTGTCAGATGACTCGACTTCCAG 979210 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 ||||| ||||| || |||||| | || | ||| Sbjct 979211 GGTGATGGTCTTCCCAGTGAGACTGTTGAAAAA 979243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159150707907755