Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq23 118 7e-22 >seq23 Length=1203155 Score = 118 bits (130), Expect = 7e-22 Identities = 153/209 (73%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 23631 CCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAA 23689 |||||| || |||||||||||| | |||||||| ||| | ||||| |||| ||| | || Sbjct 978071 CCTCACAGGTAAAACGATCACTTTGGAAGTTGAGTCCTCCGACACCATTGACAATGTGAA 978012 Query 23690 AACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCG 23749 | || | || ||||| || ||| | || || |||||||||||| | || || || | Sbjct 978011 GGCTAAGA-TTCAAGACAAGGAGGGTATCCCCCCGGATCAACAGCGTCTCATTTTCGCTG 977953 Query 23750 GCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACAT 23809 |||||||||| ||||| | || || || | ||||||||||| ||||| || || || Sbjct 977952 GCAAACAACTTGAAGATGGGCGTACCTTGGCTGATTACAACATCCAAAAGGAATCTACTC 977893 Query 23810 TACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 | ||| | || | | | ||||||||| Sbjct 977892 TTCATCTCGTACTCCGTCTCCGAGGAGGA 977864 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 23632 CTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAA 23691 || || || ||||| |||||||| |||||||| || ||||||| | || | | || Sbjct 978365 CTTACCGGCAAAACCATCACTCTAGAAGTTGAATCATCGGACACCATCGACAACGTGAAG 978306 Query 23692 CAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGC 23751 || ||| || ||||| || | || || ||||||||||| | || || || || Sbjct 978305 GCCAAGATTCAGGATAAAGAGGGAATCCCTCCCGATCAACAGCGCCTTATTTTCGCTGGA 978246 Query 23752 AAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTA 23811 || ||||| ||||||| || ||| ||| ||||||||||| ||||| ||||| ||| | Sbjct 978245 AAGCAACTTGAAGACGGTCGTACTCTAGCTGATTACAACATCCAAAAGGAGTCTACACTT 978186 Query 23812 CATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| ||| | | | |||||||| Sbjct 978185 CATTTGGTTCTTCGTCTCCGAGGAGG 978160 Score = 104 bits (114), Expect = 2e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 23632 CTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAA 23691 ||||| || || || ||||| || ||||| || || | ||||| |||| | | || Sbjct 979231 CTCACTGGGAAGACCATCACCCTGGAAGTCGAGTCATCTGACACCATTGACAACGTCAAG 979172 Query 23692 CAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGC 23751 || ||| ||||| |||||| | || || ||||||||||| || || ||||| || Sbjct 979171 GCCAAGATTCAAGACAAGGAAGGTATTCCCCCGGATCAACAGCGATTGATCTTTGCTGGT 979112 Query 23752 AAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTA 23811 || ||| ||||||||| || || || | ||| |||||||| ||||| || ||||| || Sbjct 979111 AAGCAATTGGAAGACGGTCGTACCTTGGCCGACTACAACATCCAAAAGGAATCCACCTTG 979052 Query 23812 CA 23813 || Sbjct 979051 CA 979050 Score = 102 bits (112), Expect = 6e-17 Identities = 138/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 23632 CTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAA 23690 || || || |||||||||||| | || || || ||| | ||||| |||| ||| | || Sbjct 978656 CTGACTGGCAAAACGATCACTTTGGAGGTGGAGTCCTCCGACACCATTGACAATGTCAAG 978597 Query 23691 ACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGG 23750 | |||||| ||||| ||||| | || || || || |||||| | || ||||| || Sbjct 978596 GC-GAAAATTCAAGACAAGGAAGGCATCCCTCCGGACCAGCAGCGTCTGATCTTTGCTGG 978538 Query 23751 CAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATT 23810 || ||||| ||||||| ||||| | | || |||||||| ||||| |||||||| | Sbjct 978537 TAAGCAACTTGAAGACGGCCGCACCCTTGCGGACTACAACATTCAAAAGGAGTCCACCCT 978478 Query 23811 ACATTTAGTT 23820 || || ||| Sbjct 978477 TCACTTGGTT 978468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009241604196