Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq23 159 8e-34 seq49 127 5e-24 seq75 104 6e-17 seq51 104 6e-17 seq48 104 6e-17 >seq23 Length=1203155 Score = 159 bits (176), Expect = 8e-34 Identities = 150/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| |||||||||||||| || | |||||||| ||||| || | |||||| Sbjct 977584 AGAACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAATCCGCCAAGGTGCGACCATCT 977643 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| |||||||| |||||||| || |||||||||||||| Sbjct 977644 TCAAGCTGCTTTCCGGCAAAGATCAGTCGTTGCTGGTCGGGGGGGATACCTTCCTTGTCA 977703 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| ||| || ||||| ||||| || | ||| || || || ||||| || Sbjct 977704 TGGATCTTTGCCTTGACGTTGTCGATCGTGTCGGAAGATTCGACCTCCAAAGTGATTGTT 977763 Query 225682 TTGCCCGTCAA 225692 || || ||||| Sbjct 977764 TTCCCTGTCAA 977774 Score = 145 bits (160), Expect = 2e-29 Identities = 145/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || || ||||| ||||| ||||||| |||||||| ||||| || | ||||||| Sbjct 977880 AGTACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGCCAAGGTACGCCCATCT 977939 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || |||||||| || || || ||||| || || || ||||| ||||||||| Sbjct 977940 TCAAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGATCCGGGGGGATACCCTCCTTGTCT 977999 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||||||| || |||||||| |||| || || || || |||||||| Sbjct 978000 TGAATCTTAGCCTTCACATTGTCAATGGTGTCGGAGGACTCAACTTCCAAAGTGATCGTT 978059 Query 225682 TTGCCCGT 225689 || || || Sbjct 978060 TTACCTGT 978067 Score = 141 bits (156), Expect = 2e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| || |||||||| | |||||||| ||||||| ||||| |||||||| || Sbjct 979031 ACGAAGTCGCAACACAAGGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGCCAAGGT 979090 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| | ||||| ||||| ||||| | ||| ||||| || || |||||||| Sbjct 979091 ACGACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCGCTGTTGATCCGGGGGAATACC 979150 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||| ||||| ||| || || |||||||| || | || || || | Sbjct 979151 TTCCTTGTCTTGAATCTTGGCCTTGACGTTGTCAATGGTGTCAGATGACTCGACTTCCAG 979210 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| ||||| || || Sbjct 979211 GGTGATGGTCTTCCCAGT 979228 Score = 129 bits (142), Expect = 1e-24 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||||| || || | ||| || ||||| || ||||| | ||||| || || | || Sbjct 978457 CGAAGTCGGAGAACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGCAAGGGTG 978516 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || ||||| || ||||| ||||| ||||| || || || ||||| || || || ||| Sbjct 978517 CGGCCGTCTTCAAGTTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGGATGCCT 978576 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||| || || ||| ||| || |||||||| |||| ||||| || || Sbjct 978577 TCCTTGTCTTGAATTTTCGCCTTGACATTGTCAATGGTGTCGGAGGACTCCACCTCCAAA 978636 Query 225673 GTGATCGTCTTGCCCGTCA 225691 |||||||| ||||| |||| Sbjct 978637 GTGATCGTTTTGCCAGTCA 978655 Score = 123 bits (136), Expect = 6e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | || || ||||| || ||||||| |||||| || || | |||| || ||| Sbjct 978757 AGGACCAAATGAAGGGTGGACTCCTTTTGGATATTGTAGTCAGCAAGCGTTCGACCGTCT 978816 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||| || || |||||||| | ||| |||||||| || || ||||| || |||||| Sbjct 978817 TCCAACTGTTTGCCTGCGAAGATCAATCGCTGTTGGTCCGGAGGGATACCCTCTTTGTCT 978876 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| || ||||| ||||| ||||| || | || || |||| || || || Sbjct 978877 TGGAT-TTTGGCTTTCACGTTGTCGATCGTGTCAGAAGACTCGACCTCTAGAGTAATGGT 978935 Query 225681 CTTGCCCGTCAA 225692 |||||| ||||| Sbjct 978936 CTTGCCAGTCAA 978947 Score = 116 bits (128), Expect = 9e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || || || ||||||| |||||||| || | ||| | || ||||| || ||| Sbjct 978184 TGAAGTGTAGACTCCTTTTGGATGTTGTAATCAGCTAGAGTACGACCGTCTTCAAGTTGC 978243 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || |||||||| ||||| || ||||| ||||| || || || || || || || ||||| Sbjct 978244 TTTCCAGCGAAAATAAGGCGCTGTTGATCGGGAGGGATTCCCTCTTTATCCTGAATCTTG 978303 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||||| ||||||||||| || | ||| || |||| ||||| || ||||| || Sbjct 978304 GCCTTCACGTTGTCGATGGTGTCCGATGATTCAACTTCTAGAGTGATGGTTTTGCCGGT 978362 >seq49 Length=33859 Score = 127 bits (140), Expect = 5e-24 Identities = 204/291 (70%), Gaps = 3/291 (1%) Strand=Plus/Plus Query 7429 AAGGAACTGGAAACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATA 7488 ||||| | | ||||||||| | |||||| | || || ||| | | || || | Sbjct 3784 AAGGACATTGGAACGTTATACCTTATATTTTCTCTATTCTCAGGTTTACTTGGAACAGCA 3843 Query 7489 TTTTCTATGATTATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAAT 7548 ||||| | | ||||| | |||||| ||| || ||| ||| ||| || | || Sbjct 3844 TTTTCAGTTTTAATAAGACTTGAATTATCTGGACCTGGTGTTCAG-TATATAGCTG--AT 3900 Query 7549 AGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTT 7608 | |||| | || || ||| ||||| || ||||| | | |||||||||||| | ||| Sbjct 3901 AACCAATTATATAATAGTATAATTACAGCCCATGCTATATTAATGATTTTCTTTATGGTT 3960 Query 7609 ATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCT 7668 ||||| | | | ||||| ||||| || |||| || | ||||||||| | || | ||| Sbjct 3961 ATGCCTGCTTTAATAGGAGGTTTTGGTAATTTTTTATTACCTTTAATGGTAGGAGGACCT 4020 Query 7669 GATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 |||||||| ||||| || | || || ||||||||||||||| |||| ||| Sbjct 4021 GATATGGCATTTCCTAGATTAAATAACATAAGTTTTTGATTATTACCTCCT 4071 Score = 93.3 bits (102), Expect = 1e-13 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||||||||||||||| ||||||||||| | | ||||||||| ||||| || | Sbjct 4476 TTCTGGATGACCAAAAAATCAAAATAAATGTTGGAATAAGATAGGATCTCCTCCTCCAGC 4417 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGT 370767 | ||||| || |||||||||||||||||| || Sbjct 4416 TACTTCAAAGAAAGAAGTATTAAAATTTCTATCTGT 4381 >seq75 Length=11971 Score = 104 bits (114), Expect = 6e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 || || |||||| ||| | || || || || || | || |||||||||||||| ||| Sbjct 4621 CAGCTATACAACACGATTGTAACAGCCCACGCGTTCATAATAATTTTCTTTTTTGTAATG 4680 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || ||| | |||| || || || |||| | ||| |||| | ||||| || ||| Sbjct 4681 CCAGTTGCGGTAGGAGGATTTGGGAATTATCTATGTCCGGTAATAGTAGGTGCGCCAGAT 4740 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTA 7713 ||||| ||||||||||| || ||||| ||||||||| ||||| Sbjct 4741 ATGGCCTTTCCAAGGCTGAATAATATTAGTTTTTGACTACTA 4782 >seq51 Length=27814 Score = 104 bits (114), Expect = 6e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 || || |||||| ||| | || || || || || | || |||||||||||||| ||| Sbjct 20465 CAGCTATACAACACGATTGTAACAGCCCACGCGTTCATAATAATTTTCTTTTTTGTAATG 20524 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || ||| | |||| || || || |||| | ||| |||| | ||||| || ||| Sbjct 20525 CCAGTTGCGGTAGGAGGATTTGGGAATTATCTATGTCCGGTAATAGTAGGTGCGCCAGAT 20584 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTA 7713 ||||| ||||||||||| || ||||| ||||||||| ||||| Sbjct 20585 ATGGCCTTTCCAAGGCTGAATAATATTAGTTTTTGACTACTA 20626 >seq48 Length=39949 Score = 104 bits (114), Expect = 6e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 || || |||||| ||| | || || || || || | || |||||||||||||| ||| Sbjct 30228 CAGCTATACAACACGATTGTAACAGCCCACGCGTTCATAATAATTTTCTTTTTTGTAATG 30169 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || ||| | |||| || || || |||| | ||| |||| | ||||| || ||| Sbjct 30168 CCAGTTGCGGTAGGAGGATTTGGGAATTATCTATGTCCGGTAATAGTAGGTGCGCCAGAT 30109 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTA 7713 ||||| ||||||||||| || ||||| ||||||||| ||||| Sbjct 30108 ATGGCCTTTCCAAGGCTGAATAATATTAGTTTTTGACTACTA 30067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192529870700378