Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq22 91.5 2e-13 >seq22 Length=1232782 Score = 91.5 bits (100), Expect = 2e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 76590 CTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGG 76649 ||| || ||| || ||| || |||||||||||||| || ||| ||| | || || | Sbjct 877570 CTTTCTCAACTCGAGACATGAATAGATCAGGTATCCAAAGCGCATAAAACAAGTCCCGAG 877629 Query 76650 TTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAAT 76709 || || |||||| || || |||||| | || |||| | || | || ||| | || Sbjct 877630 CTCGACTTTCTTCCTTGCCGTGATTCTTCCTCAGGTCTAACCAGTCAAAAACATCCGCAT 877689 Query 76710 GCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATAT 76769 ||||||| || || || || || | |||| |||| ||| |||||||| ||||| | || Sbjct 877690 GCCATGGCTCAAGGTAGATTGCAAAGGCACCAGGTCTTTTGTTACCTCCTTGATCGACAT 877749 Query 76770 ATC 76772 ||| Sbjct 877750 ATC 877752 Score = 89.7 bits (98), Expect = 7e-13 Identities = 195/291 (67%), Gaps = 6/291 (2%) Strand=Plus/Plus Query 76091 AATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATT 76150 || ||||| |||||||| ||||| || |||||||| || | |||||| | || || || Sbjct 876941 AAGGCATCGGCTAGTCCTTGAACCCCGATACCAATCGGACGGTGTCTCATGTTCGACTTT 877000 Query 76151 TCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACT 76210 | || || || | ||||| ||||| || || || || |||| ||||| | || Sbjct 877001 TTCGCCTCAGGCACCGGGTAGTAATTGATGTCGATGATCCTATTCAGATTATAGGTGACC 877060 Query 76211 ACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCTATCACAAACATATTA 76270 | || || || | ||||| |||||| |||| ||||| | | ||| | Sbjct 877061 TCCTTGGTGACTTCATGAAGTTTTTGAAAATTGTATTTACCATCAACAATAAAAGTGGGT 877120 Query 76271 AGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCA---TATTGTATT 76327 || || || || |||| ||||||||| || || || | | |||| |||| || Sbjct 877121 AGGGCGATCGAGGCTAAATTACAAACAGCCACTTCGTCGGG---GGCAGAGTATTCAATA 877177 Query 76328 ATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTG 76378 ||||||||||| || || | ||||| ||||| || || | ||||||| Sbjct 877178 ATCTCCGTGCAAAGGTTGGAGGATTTGATGGTTCCGAGGTTCTTTTGGTTG 877228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712933624683840