Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq23 127 5e-24 >seq23 Length=1203155 Score = 127 bits (140), Expect = 5e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || |||||||||||||| || ||||||||||||||||| || || || | Sbjct 977873 GAGACGGAGTACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGCCAAGGTACG 977932 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||||||| || ||| || ||||| || || | ||| || |||| | ||| || || Sbjct 977933 CCCATCTTCAAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGATCCGGGGGGATACCCTC 977992 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| |||||||| || || ||| | || | | |||| || ||| ||||| | ||| Sbjct 977993 CTTGTCTTGAATCTTAGCCTTCACATTGTCAATGGTGTCGGAGGACTCAACTTCCAAAGT 978052 Query 152066 AATAGTTTTGCCCGTGAG 152083 || ||||| || ||||| Sbjct 978053 GATCGTTTTACCTGTGAG 978070 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| ||| || | ||||| || ||||| ||||| |||||||| || || | || | Sbjct 978460 AGTCGGAGAACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGCAAGGGTGCGG 978519 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || ||||| || || || || ||||| || | ||||||||||| | ||| |||||| Sbjct 978520 CCGTCTTCAAGTTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGGATGCCTTCC 978579 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||||||||| |||||| | || | | |||| || ||| || || | ||| Sbjct 978580 TTGTCTTGAATTTTCGCCTTGACATTGTCAATGGTGTCGGAGGACTCCACCTCCAAAGTG 978639 Query 152067 ATAGTTTTGCCCGTGAG 152083 || |||||||| || || Sbjct 978640 ATCGTTTTGCCAGTCAG 978656 Score = 104 bits (114), Expect = 5e-17 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | |||||| |||||||| ||||||||||||||||| |||| ||| | || ||| Sbjct 978175 AGAACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAATCAGCTAGAGTACGACCGTCT 978234 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || ||||| ||||| | ||| || || | | |||||| || || | Sbjct 978235 TCAAGTTGCTTT--CCAGCGAAAATAAGGCGCTGTTGATCGGGAGGGATTCCCTCTTTAT 978292 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | ||||| || || || | || | | |||| || || ||||| ||||| || | Sbjct 978293 CCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCCGATGATTCAACTTCTAGAGTGATGG 978352 Query 152071 TTTTGCCCGTGAG 152083 ||||||| || || Sbjct 978353 TTTTGCCGGTAAG 978365 Score = 93.3 bits (102), Expect = 1e-13 Identities = 140/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | |||||||| || ||||| || ||||||||||| || || || | Sbjct 977577 GAGACGGAGAACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAATCCGCCAAGGTGCG 977636 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 |||||||| || ||||| ||||| ||||| || | |||||||| | | ||| ||| Sbjct 977637 ACCATCTTCAAGCTGCTTT--CCGGCAAAGATCAGTCGTTGCTGGTCGGGGGGGATACCT 977694 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || ||| ||||| | || | |||| ||| || || || | | Sbjct 977695 TCCTTGTCATGGATCTTTGCCTTGACGTTGTCGATCGTGTCGGAAGATTCGACCTCCAAA 977754 Query 152064 GTAATAGTTTTGCCCGT 152080 || || ||||| || || Sbjct 977755 GTGATTGTTTTCCCTGT 977771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153819513850377