Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq23 161 2e-34 seq34 95.1 3e-14 seq15 84.2 5e-11 >seq23 Length=1203155 Score = 161 bits (178), Expect = 2e-34 Identities = 160/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || ||||| || || |||| ||| | ||| || |||||||| ||||||||||| Sbjct 978741 ACCCCCTCGCAGACGGAGGACCAAATGAAGGGTGGACTCCTTTTGGATATTGTAGTCAGC 978800 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 |||||| || || || || | ||||| || || |||||||| || |||||||| || Sbjct 978801 AAGCGTTCGACCGTCTTCCAACTGTTTGCCTGCGAAGATCAATCGCTGTTGGTCCGGAGG 978860 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||| ||||||||||| || ||||| ||| | ||||| ||||| |||| ||||| Sbjct 978861 GATACCCTCTTTGTCTTGGATTTTGGCTTTCACGTTGTCGATCGTGTCAGAAGACTCGAC 978920 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAA 283078 || ||||| || ||||| || ||||| Sbjct 978921 CTCTAGAGTAATGGTCTTGCCAGTCAA 978947 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || |||| || | ||| |||||| || |||||||| || || Sbjct 977568 ACCTCCACGGAGACGGAGAACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAATCCGC 977627 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||||| ||||| || || || || ||||||||||||| ||||| ||||| || Sbjct 977628 CAAGGTGCGACCATCTTCAAGCTGCTTTCCGGCAAAGATCAGTCGTTGCTGGTCGGGGGG 977687 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||| |||||||| ||||||||||| || ||| | ||||| ||||| |||| |||||| Sbjct 977688 GATACCTTCCTTGTCATGGATCTTTGCCTTGACGTTGTCGATCGTGTCGGAAGATTCGAC 977747 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAA 283078 || | |||||| || || || ||||| Sbjct 977748 CTCCAAAGTGATTGTTTTCCCTGTCAA 977774 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | || || || || ||| ||| ||||||||||||||||| || Sbjct 979025 ACCACCACGAAGTCGCAACACAAGGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGC 979084 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || || || || | ||| || || ||||||||||| || ||||| || || Sbjct 979085 CAAGGTACGACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCGCTGTTGATCCGGGGG 979144 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| ||||||||||| ||||| || || ||| | || || ||||| || | ||||| Sbjct 979145 AATACCTTCCTTGTCTTGAATCTTGGCCTTGACGTTGTCAATGGTGTCAGATGACTCGAC 979204 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 ||| || ||||| ||||| || || Sbjct 979205 TTCCAGGGTGATGGTCTTCCCAGT 979228 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || ||||| ||||| | || ||| |||||||||||||| ||||| Sbjct 977865 CCTCCTCGGAGACGGAGTACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGCC 977924 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || || ||||| || |||||||| || || || || | ||| ||||| || || Sbjct 977925 AAGGTACGCCCATCTTCAAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGATCCGGGGGG 977984 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||||||||| ||||| || || || | || || ||||| || | || ||| Sbjct 977985 ATACCCTCCTTGTCTTGAATCTTAGCCTTCACATTGTCAATGGTGTCGGAGGACTCAACT 978044 Query 283053 TCGAGAGTGATCGTCTTACCCGT 283075 || | ||||||||| ||||| || Sbjct 978045 TCCAAAGTGATCGTTTTACCTGT 978067 Score = 122 bits (134), Expect = 2e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || || |||| || | ||| || ||||| ||||||||||| ||| Sbjct 978451 CCGCCGCGAAGTCGGAGAACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGCA 978510 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| || || ||||| || || |||||||||| ||| || ||||| || Sbjct 978511 AGGGTGCGGCCGTCTTCAAGTTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGG 978570 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||| || || || || || | || || ||||| || | || || Sbjct 978571 ATGCCTTCCTTGTCTTGAATTTTCGCCTTGACATTGTCAATGGTGTCGGAGGACTCCACC 978630 Query 283053 TCGAGAGTGATCGTCTTACCCGTCA 283077 || | ||||||||| || || |||| Sbjct 978631 TCCAAAGTGATCGTTTTGCCAGTCA 978655 Score = 114 bits (126), Expect = 3e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || ||||| |||| ||| | || || |||||||||||||| ||||| Sbjct 978160 CCTCCTCGGAGACGAAGAACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAATCAGCT 978219 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || || || ||||| || || || || || | || ||||| || || Sbjct 978220 AGAGTACGACCGTCTTCAAGTTGCTTTCCAGCGAAAATAAGGCGCTGTTGATCGGGAGGG 978279 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||| || || || ||||| || || ||| | ||||| |||||||| | ||| ||| Sbjct 978280 ATTCCCTCTTTATCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCCGATGATTCAACT 978339 Query 283053 TCGAGAGTGATCGTCTTACCCGT 283075 || |||||||| || || || || Sbjct 978340 TCTAGAGTGATGGTTTTGCCGGT 978362 >seq34 Length=422895 Score = 95.1 bits (104), Expect = 3e-14 Identities = 157/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 274670 AGCATCACGTACGTTCAGCAACTTACCGCGGAGAGGGAAAACGCCATACCTTTCGCGCCC 274729 ||| ||||| ||||| |||| ||||| | |||||||| || || || | || ||||| Sbjct 24369 AGCTTCACGAACGTTAAGCAGTTTACCTCTCAGAGGGAATACACCGTAGTTATCACGCCC 24428 Query 274730 GATGACCGAAAGACCGGCGATCGCGA--GAGTTGCTGCTGAATCTCCCTCTGTGAGAATC 274787 |||||| ||||||||||| | || | || ||| ||||| |||||||| || || ||| Sbjct 24429 GATGACTGAAAGACCGGCAACTGCTAAGGATTTG--GCTGAGTCTCCCTCCGTCAGGATC 24486 Query 274788 AAAGTACACAACTTACTGTTT-TTTGTGCCTGCAAAAGCCGCGTCATTCAGTTTCGGAAT 274846 | ||||| | || ||| || || || ||| | || || | |||||| ||| Sbjct 24487 AGTGTACA-ATCTGCGGCTTTCTTCGTTCCAGCATTATTTGCATCTTCCAGTTTAACAAT 24545 Query 274847 ACCAGTGACGCGAGTCTTCTTGGCACCATCGGTCTTCTTTAG 274888 |||||||| |||| |||| |||||||| || || || Sbjct 24546 ACCAGTGATACGAGAACGTTTGGACCCATCGGTTTTTTTGAG 24587 >seq15 Length=1966558 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGG 283026 ||||||| ||||||||||| || || || ||||| ||||| ||||| | || || Sbjct 1871453 AGATCAATCGTTGTTGGTCCGGGGGGATGCCTTCCTTCTCTTGAATCTTAGTCTTGACAT 1871394 Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCA 283077 | ||||| ||||| | | |||||| ||||| ||||| |||||||| |||| Sbjct 1871393 TGTCGATCGTGTCGGCGGATTCGACCTCGAGGGTGATGGTCTTACCAGTCA 1871343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738033212898