Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq23 105 5e-18 >seq23 Length=1203155 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | |||| |||||| ||||| | ||| ||||||||||||||||| Sbjct 979019 TTGCATACCACCACGAAGTCGCAACACAAGGTGCAAGGTGGATTCCTTTTGGATGTTGTA 979078 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||| | || |||| |||| ||||| || ||||||||||| ||||| ||||| Sbjct 979079 GTCGGCCAAGGTACGACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCGCTGTTGATC 979138 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | || | ||||||||| || ||||| ||| | | | |||||||| | || Sbjct 979139 CGGGGGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACGTTGTCAATGGTGTCAGATGA 979198 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 || || |||| || || ||||| || ||||| Sbjct 979199 CTCGACTTCCAGGGTGATGGTCTTCCCAGTGAG 979231 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/184 (72%), Gaps = 3/184 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||| || || || ||||||||||| || | ||| | || || Sbjct 977587 ACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAATCCGCCAAGGTGCGACCATCTTCA 977646 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||||||||||| || ||||| || | || | ||||||||| || Sbjct 977647 AGCTGCTTTCCGGCAAAGATCAGTCGTTGCTGGTCGGGGGGGATACCTTCCTTGTCATGG 977706 Query 44249 ATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | ||| | || ||||||| ||||| ||||||| || || || || Sbjct 977707 ATCTT-TGCCTTGACGTTGTCGATCGTGTCGGAAGATTCGACCTCCAAAGTGATTGT-TT 977764 Query 44308 TCCC 44311 |||| Sbjct 977765 TCCC 977768 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| |||| || | | || || ||||| || ||||||||||||||||| Sbjct 977858 TTGCATTCCTCCTCGGAGACGGAGTACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTA 977917 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| || | ||| | || || || || || || || || || | |||||| ||||| Sbjct 977918 ATCAGCCAAGGTACGCCCATCTTCAAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGATC 977977 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | || | ||| ||||| || ||||| ||||| | | |||||||||| ||| Sbjct 977978 CGGGGGGATACCCTCCTTGTCTTGAATCTTAGCCTTCACATTGTCAATGGTGTCGGAGGA 978037 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 || || |||| || ||||| || || |||||| Sbjct 978038 CTCAACTTCCAAAGTGATCGTTTTACCTGTGAGG 978071 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| ||||||| ||| | | |||| ||||| ||| |||||||||||| ||||| Sbjct 978735 TTGCATACCCCCTCGCAGACGGAGGACCAAATGAAGGGTGGACTCCTTTTGGATATTGTA 978794 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || || || || |||| |||| ||| || || || |||||||| ||||| || || Sbjct 978795 GTCAGCAAGCGTTCGACCGTCTTCCAACTGTTTGCCTGCGAAGATCAATCGCTGTTGGTC 978854 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGG 44282 | ||| | ||| || || || || || |||| | ||| | || ||||| | | Sbjct 978855 CGGAGGGATACCCTCTTTGTCTTGGAT-TTTGGCTTTCACGTTGTCGATCGTGTCAGAAG 978913 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 | || ||||| | ||||| ||||| || || Sbjct 978914 ACTCGACCTCTAGAGTAATGGTCTTGCCAGT 978944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990018297679