Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20]
87 sequences; 66,403,143 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq23 149 2e-30
seq15 89.7 1e-12
>seq23
Length=1203155
Score = 149 bits (164), Expect = 2e-30
Identities = 146/187 (78%), Gaps = 1/187 (1%)
Strand=Plus/Minus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
||||| ||||| ||||| | ||||| ||| || ||||| ||||| |||||||| |
Sbjct 977771 ACAGGGAAAACAATCACTTTGGAGGTCGAATCTTCCGACACGATCGACAACGTCAAGGCA 977712
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
||||| || ||||| ||||| ||||| || |||||||||||||| ||||| ||||||||
Sbjct 977711 AAGATCCATGACAAGGAAGGTATCCCCCCCGACCAGCAACGACTGATCTTTGCCGGAAAG 977652
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
||||| |||||||| | || | || ||||| ||| | || |||||||| || || ||
Sbjct 977651 CAGCTTGAAGATGGTCGCACCTTGGCGGATTACAACATTCAGAAAGAATCCACTCTTCA- 977593
Query 178125 CTTGTTT 178131
|||| ||
Sbjct 977592 CTTGGTT 977586
Score = 143 bits (158), Expect = 6e-29
Identities = 145/189 (77%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001
|| || || ||||| ||||| || || || ||| || ||||||||||| ||||| ||
Sbjct 978365 CTTACCGGCAAAACCATCACTCTAGAAGTTGAATCATCGGACACCATCGACAACGTGAAG 978306
Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061
||||||||||| ||||| ||||||||||| || || || || ||||| ||||| |||
Sbjct 978305 GCCAAGATTCAGGATAAAGAGGGAATCCCTCCCGATCAACAGCGCCTTATTTTCGCTGGA 978246
Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121
|| || || ||||| || | ||||| || ||||| ||| ||||||| || || |||||
Sbjct 978245 AAGCAACTTGAAGACGGTCGTACTCTAGCTGATTACAACATCCAAAAGGAGTCTACACTT 978186
Query 178122 CATCTTGTT 178130
||| | |||
Sbjct 978185 CATTTGGTT 978177
Score = 127 bits (140), Expect = 5e-24
Identities = 141/188 (75%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001
|||||||| ||||||||||| | || || || ||| |||||||| || || || ||
Sbjct 978070 CTCACAGGTAAAACGATCACTTTGGAAGTTGAGTCCTCCGACACCATTGACAATGTGAAG 978011
Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061
|||||||| ||||| || || ||||| ||||| || || || || || ||||| ||
Sbjct 978010 GCTAAGATTCAAGACAAGGAGGGTATCCCCCCGGATCAACAGCGTCTCATTTTCGCTGGC 977951
Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121
||||| || |||||||| | || | || ||||| ||| ||||||| ||||| || ||
Sbjct 977950 AAACAACTTGAAGATGGGCGTACCTTGGCTGATTACAACATCCAAAAGGAATCTACTCTT 977891
Query 178122 CATCTTGT 178129
||||| ||
Sbjct 977890 CATCTCGT 977883
Score = 127 bits (140), Expect = 5e-24
Identities = 143/190 (75%), Gaps = 1/190 (1%)
Strand=Plus/Minus
Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001
|| || || ||||||||||| | |||||||| ||| |||||||| || || |||||
Sbjct 978656 CTGACTGGCAAAACGATCACTTTGGAGGTGGAGTCCTCCGACACCATTGACAATGTCAAG 978597
Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061
|| ||||| ||||| ||||| ||||||||||||||||| || || ||||| || ||
Sbjct 978596 GCGAAAATTCAAGACAAGGAAGGCATCCCTCCGGACCAGCAGCGTCTGATCTTTGCTGGT 978537
Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121
|| || || ||||| || | || ||||| || || ||| | ||||| || || || ||
Sbjct 978536 AAGCAACTTGAAGACGGCCGCACCCTTGCGGACTACAACATTCAAAAGGAGTCCACCCTT 978477
Query 178122 CATCTTGTTT 178131
|| |||| ||
Sbjct 978476 CA-CTTGGTT 978468
Score = 113 bits (124), Expect = 1e-19
Identities = 133/180 (74%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
|| || || || || || || ||||| || || ||||| ||||| ||||| |||
Sbjct 978944 ACTGGCAAGACCATTACTCTAGAGGTCGAGTCTTCTGACACGATCGACAACGTGAAAGCC 978885
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
|| || || |||||||| || |||||||||||||| || ||| | |||||||| || |||
Sbjct 978884 AAAATCCAAGACAAAGAGGGTATCCCTCCGGACCAACAGCGATTGATCTTCGCAGGCAAA 978825
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
||| | ||||| || | || ||||| || || || ||||||| || || || || |||
Sbjct 978824 CAGTTGGAAGACGGTCGAACGCTTGCTGACTACAATATCCAAAAGGAGTCCACCCTTCAT 978765
Score = 84.2 bits (92), Expect = 5e-11
Identities = 85/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAA 178000
|||||| || ||||| || ||| | || || || || ||||| ||||| ||||||||
Sbjct 979594 TCTCACCGGCAAAACAATTACCTTGGAAGTCGAGTCTTCTGACACTATCGACAACGTCAA 979535
Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTAT 178051
|| ||||| ||||| || || |||||||| ||||||||||| |||||
Sbjct 979534 GGCTAAAATTCAAGACAAGGAGGGCATCCCTCCAGACCAGCAACGTCTTAT 979484
>seq15
Length=1966558
Score = 89.7 bits (98), Expect = 1e-12
Identities = 87/112 (78%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001
|| || || || || |||||||||||||| ||| | | ||||| ||||| || |||||
Sbjct 1871342 CTGACTGGTAAGACCATCACCCTCGAGGTCGAATCCGCCGACACGATCGACAATGTCAAG 1871401
Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCT 178053
|||||||| || || ||||| ||||| |||||||| |||||| | ||||
Sbjct 1871402 ACTAAGATTCAAGAGAAGGAAGGCATCCCCCCGGACCAACAACGATTGATCT 1871453
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203729858215878
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |