Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq23 149 2e-30 seq15 89.7 1e-12 >seq23 Length=1203155 Score = 149 bits (164), Expect = 2e-30 Identities = 146/187 (78%), Gaps = 1/187 (1%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 ||||| ||||| ||||| | ||||| ||| || ||||| ||||| |||||||| | Sbjct 977771 ACAGGGAAAACAATCACTTTGGAGGTCGAATCTTCCGACACGATCGACAACGTCAAGGCA 977712 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| || ||||| ||||| ||||| || |||||||||||||| ||||| |||||||| Sbjct 977711 AAGATCCATGACAAGGAAGGTATCCCCCCCGACCAGCAACGACTGATCTTTGCCGGAAAG 977652 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| |||||||| | || | || ||||| ||| | || |||||||| || || || Sbjct 977651 CAGCTTGAAGATGGTCGCACCTTGGCGGATTACAACATTCAGAAAGAATCCACTCTTCA- 977593 Query 178125 CTTGTTT 178131 |||| || Sbjct 977592 CTTGGTT 977586 Score = 143 bits (158), Expect = 6e-29 Identities = 145/189 (77%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 || || || ||||| ||||| || || || ||| || ||||||||||| ||||| || Sbjct 978365 CTTACCGGCAAAACCATCACTCTAGAAGTTGAATCATCGGACACCATCGACAACGTGAAG 978306 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||||||||| ||||| ||||||||||| || || || || ||||| ||||| ||| Sbjct 978305 GCCAAGATTCAGGATAAAGAGGGAATCCCTCCCGATCAACAGCGCCTTATTTTCGCTGGA 978246 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121 || || || ||||| || | ||||| || ||||| ||| ||||||| || || ||||| Sbjct 978245 AAGCAACTTGAAGACGGTCGTACTCTAGCTGATTACAACATCCAAAAGGAGTCTACACTT 978186 Query 178122 CATCTTGTT 178130 ||| | ||| Sbjct 978185 CATTTGGTT 978177 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 |||||||| ||||||||||| | || || || ||| |||||||| || || || || Sbjct 978070 CTCACAGGTAAAACGATCACTTTGGAAGTTGAGTCCTCCGACACCATTGACAATGTGAAG 978011 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 |||||||| ||||| || || ||||| ||||| || || || || || ||||| || Sbjct 978010 GCTAAGATTCAAGACAAGGAGGGTATCCCCCCGGATCAACAGCGTCTCATTTTCGCTGGC 977951 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121 ||||| || |||||||| | || | || ||||| ||| ||||||| ||||| || || Sbjct 977950 AAACAACTTGAAGATGGGCGTACCTTGGCTGATTACAACATCCAAAAGGAATCTACTCTT 977891 Query 178122 CATCTTGT 178129 ||||| || Sbjct 977890 CATCTCGT 977883 Score = 127 bits (140), Expect = 5e-24 Identities = 143/190 (75%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 || || || ||||||||||| | |||||||| ||| |||||||| || || ||||| Sbjct 978656 CTGACTGGCAAAACGATCACTTTGGAGGTGGAGTCCTCCGACACCATTGACAATGTCAAG 978597 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 || ||||| ||||| ||||| ||||||||||||||||| || || ||||| || || Sbjct 978596 GCGAAAATTCAAGACAAGGAAGGCATCCCTCCGGACCAGCAGCGTCTGATCTTTGCTGGT 978537 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121 || || || ||||| || | || ||||| || || ||| | ||||| || || || || Sbjct 978536 AAGCAACTTGAAGACGGCCGCACCCTTGCGGACTACAACATTCAAAAGGAGTCCACCCTT 978477 Query 178122 CATCTTGTTT 178131 || |||| || Sbjct 978476 CA-CTTGGTT 978468 Score = 113 bits (124), Expect = 1e-19 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || || || || ||||| || || ||||| ||||| ||||| ||| Sbjct 978944 ACTGGCAAGACCATTACTCTAGAGGTCGAGTCTTCTGACACGATCGACAACGTGAAAGCC 978885 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 || || || |||||||| || |||||||||||||| || ||| | |||||||| || ||| Sbjct 978884 AAAATCCAAGACAAAGAGGGTATCCCTCCGGACCAACAGCGATTGATCTTCGCAGGCAAA 978825 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||| | ||||| || | || ||||| || || || ||||||| || || || || ||| Sbjct 978824 CAGTTGGAAGACGGTCGAACGCTTGCTGACTACAATATCCAAAAGGAGTCCACCCTTCAT 978765 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAA 178000 |||||| || ||||| || ||| | || || || || ||||| ||||| |||||||| Sbjct 979594 TCTCACCGGCAAAACAATTACCTTGGAAGTCGAGTCTTCTGACACTATCGACAACGTCAA 979535 Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTAT 178051 || ||||| ||||| || || |||||||| ||||||||||| ||||| Sbjct 979534 GGCTAAAATTCAAGACAAGGAGGGCATCCCTCCAGACCAGCAACGTCTTAT 979484 >seq15 Length=1966558 Score = 89.7 bits (98), Expect = 1e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 || || || || || |||||||||||||| ||| | | ||||| ||||| || ||||| Sbjct 1871342 CTGACTGGTAAGACCATCACCCTCGAGGTCGAATCCGCCGACACGATCGACAATGTCAAG 1871401 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCT 178053 |||||||| || || ||||| ||||| |||||||| |||||| | |||| Sbjct 1871402 ACTAAGATTCAAGAGAAGGAAGGCATCCCCCCGGACCAACAACGATTGATCT 1871453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203729858215878