Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq23 122 8e-23 >seq23 Length=1203155 Score = 122 bits (134), Expect = 8e-23 Identities = 162/221 (73%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| || || | |||| || || ||| |||||| |||||||| ||||| | Sbjct 978451 CCGCCGCGAAGTCGGAGAACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGCA 978510 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || || ||||| || || || ||||| ||||| ||||||| || Sbjct 978511 AGGGTGCGGCCGTCTTCAAGTTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGG 978570 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCAC 41814 | || |||||||| ||| |||| || | || | || | ||||| |||||||| Sbjct 978571 ATGCCTTCCTTGTCT-TGAATTTTCGCCTTGACATTGTCAATGGTGTCGGAGGACTCCAC 978629 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAA 41855 ||||| || |||||||| || ||||| | ||| |||||| Sbjct 978630 CTCCAAAGTGATCGTTTTGCCAGTCAGTCTGTTT-CGAAAA 978669 Score = 86.0 bits (94), Expect = 6e-12 Identities = 144/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || ||| || ||||||||||| || || | Sbjct 977569 CCTCCACGGAGACGGAGAACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAATCCGCC 977628 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || || |||||||| ||||| || ||||| || || ||||| | ||| Sbjct 977629 AAGGTGCGACCATCTTCAAGCTGCTTTCCGGCAAAGATCAGTCGTTGCTGGTCGGGGGGG 977688 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||| |||| | ||||| | ||| | | | |||||| || || || Sbjct 977689 ATACCTTCCTTGT-CATGGATCTTTGCCTTGACGTTGTCGATCGTGTCGGAAGATTCGAC 977747 Query 41815 CTCCACCGTTATCGTTTTACCCGTCA 41840 ||||| || || ||||| || |||| Sbjct 977748 CTCCAAAGTGATTGTTTTCCCTGTCA 977773 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || || ||||| || ||||| || || | Sbjct 977865 CCTCCTCGGAGACGGAGTACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGCC 977924 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| ||| | || || || || ||||| ||||| || || |||||||| |||| ||| Sbjct 977925 AAGGTACGCCCATCTTCAAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGATCCGGGGGG 977984 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCAC 41814 | | ||||||||| ||| | || || | || | || | ||||| ||||| || Sbjct 977985 ATACCCTCCTTGTCT-TGAATCTTAGCCTTCACATTGTCAATGGTGTCGGAGGACTCAAC 978043 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAG 41841 |||| || ||||||||||| || || Sbjct 978044 TTCCAAAGTGATCGTTTTACCTGTGAG 978070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303497244400