Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2225 102 1e-16 seq8935 84.2 3e-11 >seq2225 Length=6904 Score = 102 bits (112), Expect = 1e-16 Identities = 150/212 (71%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 24456 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCT 24515 |||||||| || || ||||||| |||||| | ||| || ||||| || || | ||| Sbjct 2488 ATTTGAAAGCCATAAAAACATCGAGCCTCAGCAATTTGGACTTCGCCACTGAACCTTTCA 2429 Query 24516 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 24575 |||||| || || || ||||| || || ||||| || || | |||||||| ||| Sbjct 2428 ATTAAATTCTCGTTGACGATTCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTGATA 2369 Query 24576 AAATATTTTTCGTCTGGTGTTAGTTTATT---CCAATCATTGATATCTTTAGATATATCC 24632 || | ||||||||||| | || || || |||||||| ||||| || || | ||| Sbjct 2368 AAGTGTTTTTCGTCTGAATTCAGCTTGTTCTCCCAATCATGCATATCCTTTGACAAATCA 2309 Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGC 24664 | ||| || | ||||| || || || || || Sbjct 2308 ATTTCCTCTGCAGTCCAGAAAGAAGCTTCAGC 2277 Score = 86.0 bits (94), Expect = 7e-12 Identities = 164/236 (69%), Gaps = 13/236 (6%) Strand=Plus/Minus Query 24218 AAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 24277 |||||||||| || ||||| || ||||||||||| || || || || ||||| || Sbjct 2789 AAGCCAAAAT--GGGTGCAAA----CCTGAAAAGAAAATGCCCTCAACCGCAGCAAAAGC 2736 Query 24278 AATAAGTCTTTCTCCATAAC-CGGCGCT--GTCATGTATCCACTTTTGAGCCCAATCGGC 24334 ||| | || || ||| || || | | ||| ||||| | ||||||||||| Sbjct 2735 AATCAATCGCTCGCCAAAAGTCGACTTTTTGTCGGAGATCCAGGTCAATGCCCAATCGGC 2676 Query 24335 CTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACT 24394 ||||| || |||||| || || || || |||| ||| |||| || |||| | | Sbjct 2675 TTTCTTGCGTATACAAGGAATGGTGTCAATCGCATCAAACAGATGAGTTCTTTCTTCAGG 2616 Query 24395 ATCTTTAACATATGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTC 24448 |||| ||| || |||||||| | || || || || ||| || ||||||||||| Sbjct 2615 ATCTCGAACGTAGGTATCAATTAGTAAGGAATAGAC--TTCAGAGTGAATGTTTTC 2562 Score = 86.0 bits (94), Expect = 7e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193 |||||| || ||| ||| | ||||| || || || | ||| ||||||||||| || Sbjct 2955 ACATGCAAAGTCGGTGTGCAACCCCTCATCCCTTGAGATGAGTTCATTGGAAAACGTTAG 2896 Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 24250 || ||||| || ||||| ||||| |||||||| || || ||||||||||| |||| Sbjct 2895 GCCAGGCATGAGACCACGTTTTTTGAGCCAAAAGATTGAAGCAAATGATCCTTAAAA 2839 >seq8935 Length=3822 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 54229 CATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACG 54288 ||| || | ||| ||||| || ||| ||||| |||| |||||||||||| ||||||| Sbjct 532 CATAGGGACAATTCCATTAGAATAACCGTTGGTACCGGCAATATAGCTTCCAGTGGCACG 591 Query 54289 AATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 54348 ||||| ||| || || || || || || |||| || || | ||| || || Sbjct 592 AATATCGTGAATACTAAGTCCAATGCCACCAGCTGTTTTGGATATCATTGCACAGGTCTT 651 Query 54349 TAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGA 54408 ||| || ||||| || || ||| ||| ||||| ||| || ||| || ||| Sbjct 652 TAAGGTGTCATAAATTCCACAAATAGAATCTGATTTCATGCTAATTAAAAAGCATGAAGA 711 Query 54409 CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 54462 || ||| || | |||||| | |||||| | || || ||||| || ||||| Sbjct 712 CAATTGAGGATGCGGAGTTCCAGAATTAAAAAGCGTTGGGGAAGCATGGGTAAA 765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593296280110320