Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2225 102 1e-16 seq8935 95.1 2e-14 >seq2225 Length=6904 Score = 102 bits (112), Expect = 1e-16 Identities = 150/212 (71%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 33903 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCT 33962 || ||||| || || ||||||| |||||| | ||| || ||||| || || | ||| Sbjct 2488 ATTTGAAAGCCATAAAAACATCGAGCCTCAGCAATTTGGACTTCGCCACTGAACCTTTCA 2429 Query 33963 GCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 34022 |||||| || || || |||||||| || ||||| || || | |||||||| ||| Sbjct 2428 ATTAAATTCTCGTTGACGATTCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTGATA 2369 Query 34023 AAATATTTTTCGTCTGGTGTTAGTTTATT---CCAATCATTGATATCTTTAGATATATCC 34079 || | ||||||||||| | || || || |||||||| ||||| || || | ||| Sbjct 2368 AAGTGTTTTTCGTCTGAATTCAGCTTGTTCTCCCAATCATGCATATCCTTTGACAAATCA 2309 Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGC 34111 | ||| || | ||||| || || || || || Sbjct 2308 ATTTCCTCTGCAGTCCAGAAAGAAGCTTCAGC 2277 Score = 82.4 bits (90), Expect = 1e-10 Identities = 163/236 (69%), Gaps = 13/236 (6%) Strand=Plus/Minus Query 33665 AAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 |||||||||| || || || || |||||||| || || || || |||||||| || Sbjct 2789 AAGCCAAAAT--GGGTGCAAA----CCTGAAAAGAAAATGCCCTCAACCGCAGCAAAAGC 2736 Query 33725 AATAAGTCTCTCTCCATAAC-CGGCGCT--GTCATGTATCCACTTTTGAGCCCAATCGGC 33781 ||| | || ||| ||| || || | | ||| ||||| | ||||||||||| Sbjct 2735 AATCAATCGCTCGCCAAAAGTCGACTTTTTGTCGGAGATCCAGGTCAATGCCCAATCGGC 2676 Query 33782 CTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACT 33841 ||||| || |||||| || || || || |||| ||| |||| || |||| | | Sbjct 2675 TTTCTTGCGTATACAAGGAATGGTGTCAATCGCATCAAACAGATGAGTTCTTTCTTCAGG 2616 Query 33842 ATCTTTAACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTTC 33895 |||| ||| || ||||| || | || || || || ||| || ||||||||||| Sbjct 2615 ATCTCGAACGTAGGTATCAATTAGTAAGGAATAGAC--TTCAGAGTGAATGTTTTC 2562 >seq8935 Length=3822 Score = 95.1 bits (104), Expect = 2e-14 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 63979 CATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGAT 64038 ||||| || | | ||| || || |||| |||||||| || || ||||||||||| || | Sbjct 1172 CATAGGTGTAAAGATCTTCAATGACTTGGCTAAATAGCTTCTTAGTTTCCTTGTGCAGGT 1231 Query 64039 TTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAG---TACAAG 64095 | || ||||| || || ||||||| |||||||| |||||| | || | || ||| Sbjct 1232 TGCTGATCGCTATCCTAGCAGCTAGAACAGCATAATCGGGATGTCGAGTGGTCATATAAG 1291 Query 64096 TGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTC 64155 ||||| | || || |||| | |||| | || || ||||| || |||||| | | | Sbjct 1292 CGGCTG---TCTCCGCAGCCAAATTGTCAAGCTCAACAGTTGTAACGCCATTAAAAACGC 1348 Query 64156 CTTGAATAACCTTC 64169 | | ||||| ||| Sbjct 1349 CATTGATAACTTTC 1362 Score = 86.0 bits (94), Expect = 8e-12 Identities = 155/220 (70%), Gaps = 10/220 (5%) Strand=Plus/Plus Query 63669 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63728 ||| ||||| ||| | ||||| | ||| |||| ||||| || | || ||||| ||| Sbjct 794 GCAATAAATCAGG-ATAAGAAGGG-GCG--AACC--TTTTCGGACATGAGGTTGTAGGTC 847 Query 63729 TCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 63788 | || || || | |||| | |||||| || || ||||||||||| | ||||||| Sbjct 848 TTGATTGCCTTTTCAACATCCTTTCCATGAATCCCAACAGCGACACGCATAAGCATGTGC 907 Query 63789 TGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTA 63848 ||||| |||||| ||| |||| || ||| ||| | || || || | ||||| Sbjct 908 TGAGGCCTTTCAGCAACTTTGCCATTGATTCGCAAAAGATAAGAGCGCTCAAGGGTTTTG 967 Query 63849 AAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAAT 63886 || || || || ||||| ||||| ||||| |||||||| Sbjct 968 AATCCGAAGTAATTGTAGTTGAAA--TCTCGATCGTAAAT 1005 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 63467 CATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACG 63526 ||| || | ||| || || || ||| |||||||||| ||||||| |||| ||||||| Sbjct 532 CATAGGGACAATTCCATTAGAATAACCGTTGGTACCGGCAATATAGCTTCCAGTGGCACG 591 Query 63527 AATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 63586 ||||| ||| || || || || || || |||| || || | ||| || || Sbjct 592 AATATCGTGAATACTAAGTCCAATGCCACCAGCTGTTTTGGATATCATTGCACAGGTCTT 651 Query 63587 TAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGA 63646 ||| |||||||| || || || ||| ||||| ||| || ||| || ||| Sbjct 652 TAAGGTGTCATAAATTCCACAAATAGAATCTGATTTCATGCTAATTAAAAAGCATGAAGA 711 Query 63647 CATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63700 || ||| || | | |||||| | |||||| | || || ||||| || ||||| Sbjct 712 CAATTGAGGATGCGGAGTTCCAGAATTAAAAAGCGTTGGGGAAGCATGGGTAAA 765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629366422289520