Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2225 91.5 2e-13 >seq2225 Length=6904 Score = 91.5 bits (100), Expect = 2e-13 Identities = 165/236 (70%), Gaps = 13/236 (6%) Strand=Plus/Minus Query 36241 AAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 |||||||||| || ||||| || ||||||||||| || || || || ||||| || Sbjct 2789 AAGCCAAAAT--GGGTGCAAA----CCTGAAAAGAAAATGCCCTCAACCGCAGCAAAAGC 2736 Query 36301 AATAAGTCTCTCTCCATAAC-CGGCACT--GTCATGTATCCACTTTTGAGCCCAATCGGC 36357 ||| | || ||| ||| || || | | ||| ||||| | ||||||||||| Sbjct 2735 AATCAATCGCTCGCCAAAAGTCGACTTTTTGTCGGAGATCCAGGTCAATGCCCAATCGGC 2676 Query 36358 CTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACT 36417 ||||| || |||||| || || || || |||| ||| |||| || |||| | | Sbjct 2675 TTTCTTGCGTATACAAGGAATGGTGTCAATCGCATCAAACAGATGAGTTCTTTCTTCAGG 2616 Query 36418 ATCTTTAACATATGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTC 36471 |||| ||| || |||||||| | || || || || ||| || ||||||||||| Sbjct 2615 ATCTCGAACGTAGGTATCAATTAGTAAGGAATAGAC--TTCAGAGTGAATGTTTTC 2562 Score = 86.0 bits (94), Expect = 8e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216 |||||| || ||| ||| | ||||| || || || | ||| ||||||||||| || Sbjct 2955 ACATGCAAAGTCGGTGTGCAACCCCTCATCCCTTGAGATGAGTTCATTGGAAAACGTTAG 2896 Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 36273 || ||||| || ||||| ||||| |||||||| || || ||||||||||| |||| Sbjct 2895 GCCAGGCATGAGACCACGTTTTTTGAGCCAAAAGATTGAAGCAAATGATCCTTAAAA 2839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657701309687560