Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq8935 95.1 2e-14 seq2225 89.7 7e-13 >seq8935 Length=3822 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/220 (71%), Gaps = 10/220 (5%) Strand=Plus/Plus Query 80341 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTC 80400 ||| ||||| ||| | ||||| | ||| |||| ||||| |||| || ||||| ||| Sbjct 794 GCAATAAATCAGG-ATAAGAAGGG-GCG--AACC--TTTTCGGACATGAGGTTGTAGGTC 847 Query 80401 TCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGC 80460 | || || ||| | |||| | |||||| || || ||||||||||| | ||||||| Sbjct 848 TTGATTGCCTTTTCAACATCCTTTCCATGAATCCCAACAGCGACACGCATAAGCATGTGC 907 Query 80461 TGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTA 80520 ||||| |||||| | | ||| ||| ||| ||| | ||||| || | ||||| Sbjct 908 TGAGGCCTTTCAGCAACTTTGCCATTGATTCGCAAAAGATAAGAGCGCTCAAGGGTTTTG 967 Query 80521 AAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAAT 80558 || || || || ||||| ||||| ||||| |||||||| Sbjct 968 AATCCGAAGTAATTGTAGTTGAAA--TCTCGATCGTAAAT 1005 Score = 93.3 bits (102), Expect = 6e-14 Identities = 140/196 (71%), Gaps = 10/196 (5%) Strand=Plus/Plus Query 80651 CATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGAT 80710 ||||| || | | ||| || || |||| |||||||| || || ||||||||||| || | Sbjct 1172 CATAGGTGTAAAGATCTTCAATGACTTGGCTAAATAGCTTCTTAGTTTCCTTGTGCAGGT 1231 Query 80711 T--TGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATGTTGTGTAG---TACA 80765 | |||| ||||| || || |||| || |||||||| |||||| | || | || | Sbjct 1232 TGCTGAT--CGCTATCCTAGCAGCTAGAACAGCATAATCGGGATGTCGAGTGGTCATATA 1289 Query 80766 AGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATAT 80825 || ||||| | || || |||| | |||| | || || ||||| || |||||| | | Sbjct 1290 AGCGGCTG---TCTCCGCAGCCAAATTGTCAAGCTCAACAGTTGTAACGCCATTAAAAAC 1346 Query 80826 TCCTTGGATAACCTTC 80841 || | |||||| ||| Sbjct 1347 GCCATTGATAACTTTC 1362 >seq2225 Length=6904 Score = 89.7 bits (98), Expect = 7e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 |||||| || ||| ||||| ||||| || || || ||||| ||||||||||| || Sbjct 2955 ACATGCAAAGTCGGTGTGCAACCCCTCATCCCTTGAGATGAGTTCATTGGAAAACGTTAG 2896 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAA 50075 || ||||| || ||||| ||||| |||||||| || || |||||||| || |||| Sbjct 2895 GCCAGGCATGAGACCACGTTTTTTGAGCCAAAAGATTGAAGCAAATGATCCTTAAAA 2839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717754259166760