Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq8935 96.9 5e-15 seq2225 95.1 2e-14 >seq8935 Length=3822 Score = 96.9 bits (106), Expect = 5e-15 Identities = 141/196 (72%), Gaps = 10/196 (5%) Strand=Plus/Plus Query 72734 CATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGAT 72793 ||||| || | | ||| || || |||| |||||||| || || ||||||||||| || | Sbjct 1172 CATAGGTGTAAAGATCTTCAATGACTTGGCTAAATAGCTTCTTAGTTTCCTTGTGCAGGT 1231 Query 72794 T--TGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAG---TACA 72848 | |||| ||||| || || ||||||| |||||||| |||||| | || | || | Sbjct 1232 TGCTGAT--CGCTATCCTAGCAGCTAGAACAGCATAATCGGGATGTCGAGTGGTCATATA 1289 Query 72849 AGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATAT 72908 || ||||| | || || |||| | |||| | || || ||||| || |||||| | | Sbjct 1290 AGCGGCTG---TCTCCGCAGCCAAATTGTCAAGCTCAACAGTTGTAACGCCATTAAAAAC 1346 Query 72909 TCCTTGGATAACCTTC 72924 || | |||||| ||| Sbjct 1347 GCCATTGATAACTTTC 1362 Score = 89.7 bits (98), Expect = 7e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 72222 CATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACG 72281 ||| || | ||| ||||| || ||| ||||| |||| |||||||||||| ||||||| Sbjct 532 CATAGGGACAATTCCATTAGAATAACCGTTGGTACCGGCAATATAGCTTCCAGTGGCACG 591 Query 72282 AATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 72341 ||||| | ||| || || || || || || |||| || || | ||| || || Sbjct 592 AATATCGTGAATACTAAGTCCAATGCCACCAGCTGTTTTGGATATCATTGCACAGGTCTT 651 Query 72342 TAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGA 72401 ||| || ||||| || || ||| ||| ||||| ||| || ||| || ||| Sbjct 652 TAAGGTGTCATAAATTCCACAAATAGAATCTGATTTCATGCTAATTAAAAAGCATGAAGA 711 Query 72402 CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 72455 || ||| || | |||||| | |||||| | || || ||||| || ||||| Sbjct 712 CAATTGAGGATGCGGAGTTCCAGAATTAAAAAGCGTTGGGGAAGCATGGGTAAA 765 >seq2225 Length=6904 Score = 95.1 bits (104), Expect = 2e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 |||||| || ||| ||||| |||||||| || || | ||| ||||||||||| || Sbjct 2955 ACATGCAAAGTCGGTGTGCAACCCCTCATCCCTTGAGATGAGTTCATTGGAAAACGTTAG 2896 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAA 42180 || ||||| || ||||| ||||| |||||||| || || ||||||||||| |||| Sbjct 2895 GCCAGGCATGAGACCACGTTTTTTGAGCCAAAAGATTGAAGCAAATGATCCTTAAAA 2839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670658421044840