Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2225 89.7 4e-13 >seq2225 Length=6904 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/215 (70%), Gaps = 9/215 (4%) Strand=Plus/Minus Query 13475 ATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCT 13534 ||||| || ||||||||||||| |||||| | | || |||||| || ||||| Sbjct 2488 ATTTGAAAGCCATAAAAACATCGAGCCTCAGCAATTTGGACTTCGCCACTGAACCTTTCA 2429 Query 13535 GCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATA 13594 ||| || ||||| || || || || ||||||||| || ||||| | || || ||| Sbjct 2428 ATTAAATTCTCGTTGACGATTCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTGATA 2369 Query 13595 AAttttttttCGTTTTCTGA---CAAC---TTTAACCAATCTGGAAAATCTTTTGATAAA 13648 || | ||||||| ||||| || | || |||||| | | ||| ||||| ||| Sbjct 2368 AAGTGTTTTTCG---TCTGAATTCAGCTTGTTCTCCCAATCATGCATATCCTTTGACAAA 2312 Query 13649 TCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGC 13683 || | ||||| | ||||| |||||||| |||| Sbjct 2311 TCAATTTCCTCTGCAGTCCAGAAAGAAGCTTCAGC 2277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430681378861218