Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq5913 102 1e-16 >seq5913 Length=4341 Score = 102 bits (112), Expect = 1e-16 Identities = 189/280 (68%), Gaps = 12/280 (4%) Strand=Plus/Plus Query 164722 TTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAA------------ACGT 164769 |||||| ||||| |||||||||| ||||||| |||| || | | | Sbjct 1481 TTACATATTATTATTTTTGATGAATTAGATGCAATTTGTAAGCAGAGAGGTTCTACAGGA 1540 Query 164770 GGTGATAATATTATTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTA 164829 |||| || | | |||| | || || ||||| || || ||||| || |||||||| Sbjct 1541 GGTGGTACGGGTGTGGGTGATTCCGTTGTGAATCAATTACTATCTAAGATGGATGGTGTT 1600 Query 164830 GAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGAT 164889 || | |||||||| || ||| | || ||||| || ||| || | |||||||| Sbjct 1601 GATCAGCTGAATAATATCTTGATTATTGGAATGACTAATCGATTGGACATGATTGATGAG 1660 Query 164890 GCTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAA 164949 ||||| | || || |||||||||||| | | || ||||| ||||| ||| || | Sbjct 1661 GCTTTGCTTCGGCCCGGTCGATTAGAAGTCCACATGGAAATTTCCTTACCTGACGAAAAG 1720 Query 164950 GGACGCCTTCAAATTTTAAAAGTTCATGTGGCTAAAATGA 164989 || || | |||||| |||| | ||| |||||||||| Sbjct 1721 GGTCGTTTGCAAATTCTAAATATACATACTGCTAAAATGA 1760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595445139644400