Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq15031 215 1e-51 >seq15031 Length=1318 Score = 215 bits (238), Expect = 1e-51 Identities = 293/400 (73%), Gaps = 8/400 (2%) Strand=Plus/Plus Query 19431 CGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGCAGTAGTT 19490 |||||||| ||||| || || || | || |||||||||||||||||||| || | || Sbjct 923 CGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATT 982 Query 19491 CCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCA-CTTTAGA 19549 || | || || ||||| |||| |||||||| || ||||||| ||||| | | || Sbjct 983 CCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCTATATGGGAAG-CGGCATCCGTTGA 1041 Query 19550 TGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGT 19609 ||| ||||||||||| |||||||| ||| |||| |||| | ||||||||| | || || Sbjct 1042 TGAATGGTTATACAATGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGT 1101 Query 19610 AGC-AGC-ATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATGG 19667 ||| || ||| | ||| | |||||||||| || | | || ||| | || ||| Sbjct 1102 AGCTTGCTATATG--GGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGG 1159 Query 19668 ATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCG-TTTACCC 19726 || || |||||| |||| || | |||| || |||||| ||||| | | || || Sbjct 1160 ATTGCTGTTGCATATTCAGCTCCTGTTGCAGCGGCGACTGCTGT-TTTCTTGATCTATCC 1218 Query 19727 ATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTT 19786 |||| || || || ||| |||||||||||||| || || ||||||||||| || || Sbjct 1219 TATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTT 1278 Query 19787 TATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCAT 19826 |||| | ||||| || || || || ||||| ||||||||| Sbjct 1279 TATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCAT 1318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144343301081604