Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq15031 194 3e-44 seq8479 91.5 2e-13 >seq15031 Length=1318 Score = 194 bits (214), Expect = 3e-44 Identities = 280/395 (71%), Gaps = 0/395 (0%) Strand=Plus/Plus Query 211711 CGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTT 211770 ||||| || || |||| || | | ||||| ||||| || || |||||||| || || Sbjct 923 CGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATT 982 Query 211771 CCATCTTCAAACGCAATCGGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGAT 211830 || |||| || || ||||| || || |||||||| |||||||| ||| | ||||| Sbjct 983 CCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCTATATGGGAAGCGGCATCCGTTGAT 1042 Query 211831 GAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATC 211890 || ||| | |||||||| |||||||| | | | | | |||||| | | || | Sbjct 1043 GAATGGTTATACAATGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTA 1102 Query 211891 TCAGCATACATGGGAAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATC 211950 | || ||||| | ||||||||||| | ||| | ||||||||||||||||| Sbjct 1103 GCTTGCTATATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATT 1162 Query 211951 TGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTC 212010 |||||| |||||||| ||||| |||| || ||||| ||| | | || || | Sbjct 1163 GCTGTTGCATATTCAGCTCCTGTTGCAGCGGCGACTGCTGTTTTCTTGATCTATCCTATT 1222 Query 212011 GGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATG 212070 |||||||| || ||||| ||||||||| |||| || || || || ||||| || ||| Sbjct 1223 GGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATG 1282 Query 212071 TTCGTATTCCAAGCAGAACATAACATCCTTATGCA 212105 | ||||| || || || ||||| || |||||||| Sbjct 1283 ATTGTATTTCAGGCTGAGCATAATATTCTTATGCA 1317 >seq8479 Length=3538 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 194048 TCTTTATCTTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGA 194107 ||| |||||||| ||| | ||| || | ||||||||||| || || || |||||||| Sbjct 1735 TCTCTATCTTGGCAATTTATCTGCGAAACGCGATTGGGGACATGCTAAAGACTATGTTGA 1676 Query 194108 AGCGATGTGGTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGA 194167 || |||||| |||| | |||||||| ||||||||| | |||| | || || ||||| Sbjct 1675 AGGCATGTGGAAAATGCTTCAACAGGACTCACCCGATGACTTTGTGCTCGCAACCGGTGA 1616 Query 194168 ACAGTATTCTGTTAGAGA 194185 | |||| || ||||| Sbjct 1615 AACTCATTCAGTAAGAGA 1598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 806976697738040