Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq15031 167 3e-36 seq37735 152 6e-32 >seq15031 Length=1318 Score = 167 bits (184), Expect = 3e-36 Identities = 272/392 (69%), Gaps = 0/392 (0%) Strand=Plus/Plus Query 170810 GAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCA 170869 || || ||| | || ||| | | ||||| ||||| || || |||||||| | |||| Sbjct 926 GAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCT 985 Query 170870 TCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAG 170929 |||| || ||||| || || || ||||| || |||||||| || | | || || Sbjct 986 ACTTCTGCGGCTATAGGTTTGCATTTTTATCCTATATGGGAAGCGGCATCCGTTGATGAA 1045 Query 170930 TGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCT 170989 ||||| ||||| || |||||||| | || || || | |||||| | |||| | || Sbjct 1046 TGGTTATACAATGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT 1105 Query 170990 GCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGT 171049 ||| |||||| | |||||||||| | | || || ||| | |||||||| | Sbjct 1106 TGCTATATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCT 1165 Query 171050 GTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGT 171109 || ||||| ||||| ||||| | || || ||| || ||| | | ||||| | ||| Sbjct 1166 GTTGCATATTCAGCTCCTGTTGCAGCGGCGACTGCTGTTTTCTTGATCTATCCTATTGGT 1225 Query 171110 CAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTC 171169 ||||| || || ||||||||||| ||||| || || ||||| ||||| || ||| | Sbjct 1226 CAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATGATT 1285 Query 171170 GTGTTCCAAGCAGAACACAACATACTAATGCA 171201 || || || || || || || || || ||||| Sbjct 1286 GTATTTCAGGCTGAGCATAATATTCTTATGCA 1317 >seq37735 Length=758 Score = 152 bits (168), Expect = 6e-32 Identities = 220/308 (71%), Gaps = 2/308 (1%) Strand=Plus/Minus Query 171888 GGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCC 171947 || ||||||||| ||| || || || || || |||||||| || ||||| | ||| Sbjct 360 GGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGT 301 Query 171948 TCATATCTTGAGGGAGCAAACTTTTTAACTGCAGCAGTATCAACACCTGGTGAT-GCTAT 172006 || ||| | || ||| ||||| ||||| |||||||| || || |||| | || ||| | Sbjct 300 TCTTATTTGGAAGGATGCAACTTCTTAACCGCAGCAGTCTCCACTCCTGCTAATAGCT-T 242 Query 172007 GGGTCATAGTCTATTGTTCCTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTT 172066 | || | | ||||| || ||||| ||||| ||||| |||||| || || |||| Sbjct 241 AGCACACTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGTG 182 Query 172067 TCAATTAGGTGGACTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTT 172126 |||||||||||| || |||| ||||| || | || || | || ||| | |||||||| Sbjct 181 TCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGTTT 122 Query 172127 CATGCTTAGACAGTTTGAGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCACTAGC 172186 |||| | | || ||||| |||| || |||| | || ||||| || ||| | || Sbjct 121 CATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGGCCTTATAATGCAATTGC 62 Query 172187 ATTCTCAG 172194 |||||||| Sbjct 61 ATTCTCAG 54 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569860280816760