Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2225 84.2 2e-11 >seq2225 Length=6904 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/154 (73%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 21584 CCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGAT 21643 ||||||||||||||||||||||| |||||||| |||| ||||| || || | || || Sbjct 2770 CCTGAAAAGAAAATGCCCTCAACCGCAGCAAAAGCAATCAATCGCTCGCCAAAAGTCGAC 2711 Query 21644 TCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTT--TAATACAATCAATTG 21701 | ||| || | ||||| | |||||| | || |||||| |||||| ||| | Sbjct 2710 TTTTTGTCGGAGATCCAGGTCAATGCCCAATCGGC--TTTCTTGCGTATACAAGGAATGG 2653 Query 21702 TATCAATAGCTTTTAAAAGATGAtttttttCATC 21735 | ||||| || | || |||||| || |||| || Sbjct 2652 TGTCAATCGCATCAAACAGATGAGTTCTTTCTTC 2619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531519766213160