Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2225 95.1 2e-14 seq8935 93.3 5e-14 >seq2225 Length=6904 Score = 95.1 bits (104), Expect = 2e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 |||||| || ||| ||||| ||||| || || || ||||| ||||||||||| || Sbjct 2955 ACATGCAAAGTCGGTGTGCAACCCCTCATCCCTTGAGATGAGTTCATTGGAAAACGTTAG 2896 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419 || ||||| || ||||| ||||| |||||||| || ||||| |||||||| |||| Sbjct 2895 GCCAGGCATGAGACCACGTTTTTTGAGCCAAAAGATTGAAGCAAATGATCCTTAAAA 2839 Score = 93.3 bits (102), Expect = 5e-14 Identities = 148/212 (70%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 33625 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC 33684 || ||||| || || ||||||| |||||| | ||| || ||||| || || | ||| Sbjct 2488 ATTTGAAAGCCATAAAAACATCGAGCCTCAGCAATTTGGACTTCGCCACTGAACCTTTCA 2429 Query 33685 GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 33744 ||||| || || || ||||| || || ||||| || || | |||||||| ||| Sbjct 2428 ATTAAATTCTCGTTGACGATTCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTGATA 2369 Query 33745 AAATATTTTTCGTCTGGTGTTAGTTTATT---CCAATCATTGATATCTTTAGATATATCT 33801 || | ||||||||||| | || || || |||||||| ||||| || || | ||| Sbjct 2368 AAGTGTTTTTCGTCTGAATTCAGCTTGTTCTCCCAATCATGCATATCCTTTGACAAATCA 2309 Query 33802 ACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33833 | ||| || | ||||| || || || || || Sbjct 2308 ATTTCCTCTGCAGTCCAGAAAGAAGCTTCAGC 2277 Score = 82.4 bits (90), Expect = 1e-10 Identities = 163/236 (69%), Gaps = 13/236 (6%) Strand=Plus/Minus Query 33387 AAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 |||||||||| || || || || |||||||| || || || || |||||||| || Sbjct 2789 AAGCCAAAAT--GGGTGCAAA----CCTGAAAAGAAAATGCCCTCAACCGCAGCAAAAGC 2736 Query 33447 AATAAGTCTCTCTCCATAAC-CGGCGCT--GTCATGTATCCACTTTTGAGCCCAATCGGC 33503 ||| | || ||| ||| || || | | ||| ||||| | ||||||||||| Sbjct 2735 AATCAATCGCTCGCCAAAAGTCGACTTTTTGTCGGAGATCCAGGTCAATGCCCAATCGGC 2676 Query 33504 CTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACT 33563 ||||| || |||||| || || || || |||| ||| |||| || |||| | | Sbjct 2675 TTTCTTGCGTATACAAGGAATGGTGTCAATCGCATCAAACAGATGAGTTCTTTCTTCAGG 2616 Query 33564 ATCTTTAACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTTC 33617 |||| ||| || ||||| || | || || || || ||| || ||||||||||| Sbjct 2615 ATCTCGAACGTAGGTATCAATTAGTAAGGAATAGAC--TTCAGAGTGAATGTTTTC 2562 >seq8935 Length=3822 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/196 (71%), Gaps = 10/196 (5%) Strand=Plus/Plus Query 63928 CATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGAT 63987 ||||| || | | ||| || || |||| |||||||| || || ||||||||||| || | Sbjct 1172 CATAGGTGTAAAGATCTTCAATGACTTGGCTAAATAGCTTCTTAGTTTCCTTGTGCAGGT 1231 Query 63988 T--TGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAG---TACA 64042 | |||| ||||| || || ||||||| |||||||| |||||| | || | || | Sbjct 1232 TGCTGAT--CGCTATCCTAGCAGCTAGAACAGCATAATCGGGATGTCGAGTGGTCATATA 1289 Query 64043 AGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATAT 64102 || ||||| | || || |||| | |||| | || || ||||| || |||||| | | Sbjct 1290 AGCGGCTG---TCTCCGCAGCCAAATTGTCAAGCTCAACAGTTGTAACGCCATTAAAAAC 1346 Query 64103 TCCTTGAATAACCTTC 64118 || | ||||| ||| Sbjct 1347 GCCATTGATAACTTTC 1362 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 63416 CATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACG 63475 ||| || | ||| || || || ||| |||||||||| |||||||||||| ||||||| Sbjct 532 CATAGGGACAATTCCATTAGAATAACCGTTGGTACCGGCAATATAGCTTCCAGTGGCACG 591 Query 63476 AATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 63535 ||||| ||| || || || || || || |||| || || | ||| || || Sbjct 592 AATATCGTGAATACTAAGTCCAATGCCACCAGCTGTTTTGGATATCATTGCACAGGTCTT 651 Query 63536 TAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGA 63595 ||| |||||||| || || || ||| ||||| ||| || ||| || ||| Sbjct 652 TAAGGTGTCATAAATTCCACAAATAGAATCTGATTTCATGCTAATTAAAAAGCATGAAGA 711 Query 63596 CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63649 || ||| || | |||||| | |||||| | || || ||||| || ||||| Sbjct 712 CAATTGAGGATGCGGAGTTCCAGAATTAAAAAGCGTTGGGGAAGCATGGGTAAA 765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622500943986440