Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2225 96.9 4e-15 >seq2225 Length=6904 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/212 (70%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 32982 ATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT 33041 |||||||| || || || |||| |||||| | ||| || ||||| || || | ||| Sbjct 2488 ATTTGAAAGCCATAAAAACATCGAGCCTCAGCAATTTGGACTTCGCCACTGAACCTTTCA 2429 Query 33042 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 33101 |||||| || || || ||||| || || ||||| || || | |||||||| ||| Sbjct 2428 ATTAAATTCTCGTTGACGATTCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTGATA 2369 Query 33102 AAATATTTTTCGTCTGGTGTTAGTTTATT---CCAATCATTGATATCTTTAGATATATCC 33158 || | ||||||||||| | || || || |||||||| ||||| || || | ||| Sbjct 2368 AAGTGTTTTTCGTCTGAATTCAGCTTGTTCTCCCAATCATGCATATCCTTTGACAAATCA 2309 Query 33159 ACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33190 | ||| || | ||||| || || || || || Sbjct 2308 ATTTCCTCTGCAGTCCAGAAAGAAGCTTCAGC 2277 Score = 91.5 bits (100), Expect = 2e-13 Identities = 165/236 (70%), Gaps = 13/236 (6%) Strand=Plus/Minus Query 32744 AAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 |||||||||| || ||||| || ||||||||||| || || || || ||||| || Sbjct 2789 AAGCCAAAAT--GGGTGCAAA----CCTGAAAAGAAAATGCCCTCAACCGCAGCAAAAGC 2736 Query 32804 AATAAGTCTCTCTCCATAAC-CGGCGCT--GTCATGTATCCACTTTTGAGCCCAATCGGC 32860 ||| | || ||| ||| || || | | ||| ||||| | ||||||||||| Sbjct 2735 AATCAATCGCTCGCCAAAAGTCGACTTTTTGTCGGAGATCCAGGTCAATGCCCAATCGGC 2676 Query 32861 CTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACT 32920 ||||| || |||||| || || || || |||| ||| |||| || |||| | | Sbjct 2675 TTTCTTGCGTATACAAGGAATGGTGTCAATCGCATCAAACAGATGAGTTCTTTCTTCAGG 2616 Query 32921 ATCTTTAACATATGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTC 32974 |||| ||| || |||||||| | || || || || ||| || ||||||||||| Sbjct 2615 ATCTCGAACGTAGGTATCAATTAGTAAGGAATAGAC--TTCAGAGTGAATGTTTTC 2562 Score = 86.0 bits (94), Expect = 8e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719 |||||| || ||| ||| | ||||| || || || | ||| ||||||||||| || Sbjct 2955 ACATGCAAAGTCGGTGTGCAACCCCTCATCCCTTGAGATGAGTTCATTGGAAAACGTTAG 2896 Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 32776 || ||||| || ||||| ||||| |||||||| || || ||||||||||| |||| Sbjct 2895 GCCAGGCATGAGACCACGTTTTTTGAGCCAAAAGATTGAAGCAAATGATCCTTAAAA 2839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633178089796400