Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq7699 165 1e-35 seq6376 147 3e-30 >seq7699 Length=4151 Score = 165 bits (182), Expect = 1e-35 Identities = 536/831 (65%), Gaps = 20/831 (2%) Strand=Plus/Minus Query 7013 CCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATC 7072 || ||||||| ||| ||||| || | || || || || || |||||||| ||||| || Sbjct 1152 CCAGTTAAGACGGCAGCTTGAACGGCGGCACCATAAGCAACAGCCTCATCAGGGTTGATG 1093 Query 7073 GTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATT 7132 |||| || | | || |||| | || |||| | ||||||||| || ||| Sbjct 1092 CTTTTGTTTAAAGCACGTCCACCAAAAAAGTCGGATACAAGAGATTGAATTTTGGGAATT 1033 Query 7133 CGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCT 7192 || |||||||||||||| | || || || | || || | || || ||||| | || Sbjct 1032 CGAGTCGATCCACCGACGAGGACAATGTCTTCGACCTTTGCCTTGTCAATCTTGGCATCC 973 Query 7193 CGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCA 7252 || || || || || |||| |||||| | | | ||||||| Sbjct 972 TTGAGAACCTTGTCCACGGGATCCAAGGTGGAACGGAAGATTTGAGCGTTGATTTCCTCA 913 Query 7253 AAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCA 7312 || || | |||| | ||||||| || | |||| || || | ||| Sbjct 912 AATCGAG--------ATGGGAGCCGAGAAATCTTTACCACCAGATAAGGAGTCCACCTCA 861 Query 7313 ATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAA 7372 | ||| ||||||| || || | |||||||| || ||||| || || | || | | Sbjct 860 ACGGTAGTTTGTGTGACTGACGAAAGGGTTCGCTTAGCTCGCTCGCAAGCGGAACGAAGA 801 Query 7373 CGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCA 7432 || || || || || | | ||| | ||||| | || | || || || || |||| Sbjct 800 CGTCGCAGCGCGCGGGCATCACCAGTGATATCGATATTTTCCTTGCGCTTGAATTCTTTC 741 Query 7433 GAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCG 7492 || ||| ||||| ||| || ||||||||||||||||| || || || || Sbjct 740 TTAAAATGTTCGAGGAGCGCATTATCAAAGTCTTCACCACCCAAGTGAGTGTCACCGGCA 681 Query 7493 GTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCA 7552 || || || || || | || || ||||| | | || |||||||| || ||| Sbjct 680 GTTGCCTTAACGGTGAAAACTCCCCCGGCAATGGAAAGGAGGGAGACATCAAAGGTCCCA 621 Query 7553 CCACCCAGGTCAAAAATGAGTAC-GTTCGTATCGTCGT---CTTTGT-TC-------TTA 7600 || |||| |||||||||||| || |||| | | || | |||| | || | | Sbjct 620 CCCCCCAAGTCAAAAATGAGGACGGTTCTTTCCTTCTTATCCTTTTTGTCACTCGCTTCA 561 Query 7601 TCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGG 7660 | |||||||| ||||| || || || |||||||| || || ||||||||| | || Sbjct 560 CCAAGACCGTAAGCGATGGCAGCGGCAGTTGGTTCGTTGATGATACGAAGAACATCAAGA 501 Query 7661 CCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGG 7720 |||||||||| | || ||||| || | | |||||| || || ||||| || || || Sbjct 500 CCAGCAATAGCACCGGCGTCTTTAGTTGATAATCGTTGGGAGTCATTAAAATAAGCTGGT 441 Query 7721 ACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATT 7780 || || | ||||| | | || | || ||||| | | ||| ||| | ||||||| Sbjct 440 ACGGTGATAACCGCTTTTTTCACCTCTTTCCCGAGTTTGGCTTCAGCGGTTTCTTTCAGC 381 Query 7781 TTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCA 7831 || | | ||||| | ||||| |||| || | ||| |||||||||| Sbjct 380 TTAGCCAAGACCATAGCCGAAATTTCTTGAGGGGAAAAAGTTTTCGTTTCA 330 >seq6376 Length=4460 Score = 147 bits (162), Expect = 3e-30 Identities = 231/331 (70%), Gaps = 0/331 (0%) Strand=Plus/Minus Query 7401 TATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGA 7460 || ||||||| | ||| ||||| ||||| | ||||| | |||| |||| Sbjct 1946 TACCTTTCTTGTTTTTGCGTTTGAACTCGGTAACAAAGTGGTTCACAAGTCGATTGTCGA 1887 Query 7461 AATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTT 7520 | ||||| |||||||| || || || || || || || |||||||| ||||| || | | Sbjct 1886 AGTCTTCTCCACCCAAATGAGTGTCACCGGCAGTGGCCTTGACTTCGAAGATGCCCTCCT 1827 Query 7521 CAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCG 7580 | ||| | | | || |||||||| |||||||| || || ||||| || || || || Sbjct 1826 CGATGGTAAGAAGGGAGACATCAAAGGTACCACCTCCAAGATCAAAGATCAGGACATTGC 1767 Query 7581 TATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAA 7640 || | | | ||||| |||||||| || || || || || || |||||||| |||| Sbjct 1766 GCTCTCCCTGGGTTTTCTTGTCGAGACCATAAGCAATGGCGGCGGCGGTTGGTTCGTTAA 1707 Query 7641 TAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCG 7700 | || || ||| ||| || || | ||| | ||||| || || || || || || | Sbjct 1706 TTATTCGGAGAACGTTAAGACCCGAAATCAAACCAGCATCCTTGGTGGCCTGGCGCTGGG 1647 Query 7701 AATCGTTAAAGTAGGCCGGGACCGTTACGAC 7731 | || ||||||||||| ||||| || ||||| Sbjct 1646 AGTCATTAAAGTAGGCAGGGACAGTAACGAC 1616 Score = 116 bits (128), Expect = 5e-21 Identities = 151/208 (73%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 || || |||||||| || ||||| || ||||| | |||||||| || ||||||||| Sbjct 1291 CCAATGAGACGCTTGGCGTCAAAGACAGTGTTGTGTGGGTTCATAGCCACTTGGTTCTTG 1232 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || || || || || | | |||| | | || || || || || || || || || Sbjct 1231 GCAGCATCACCAATCAACCTTTCAGAGT---CAGTGAAGGCAACATAGGAAGGAGTAGTG 1175 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCAC 8116 || || ||||||||||| ||||| ||||| || ||||| |||||||| || || || || Sbjct 1174 CGGTTTCCTTGGTCGTTGGCAATGATTTCAACTCGGTCATTTTGCCATACACCAACACAG 1115 Query 8117 GAATACGTTGTTCCTAAATCAATACCGA 8144 || || || || || | ||| ||||||| Sbjct 1114 GAGTATGTGGTGCCGAGATCGATACCGA 1087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634677814679560