Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq12608 111 2e-19 seq8479 84.2 3e-11 >seq12608 Length=2986 Score = 111 bits (122), Expect = 2e-19 Identities = 248/367 (68%), Gaps = 4/367 (1%) Strand=Plus/Plus Query 105947 GTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATT 106006 ||||| || |||||||||||||| |||| ||||| ||| || || |||||||| Sbjct 1954 GTGTATGGCTCAAAGCATTCATTGAAGCCCAGAATTTGGCTGGTTGATGCAGTTGGCATC 2013 Query 106007 GGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCC 106066 || || ||||||||| ||| || | || | | ||||| ||| || || |||| Sbjct 2014 GGCGCAATCAAAAGAGAGTTTCGCAATCCGCTGACTTTGATTTTTTCTTTTAGGTTATCC 2073 Query 106067 CAGTCGTAGTTGAGCTT-GGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGA 106125 || || | | | | ||||| || | ||||||||||||||||||| | |||||| Sbjct 2074 CATTCCCACAAGTCCGTCGGTTTGACAT-CCCACATATCAAATTGAAGTATGCCTTGGCT 2132 Query 106126 CGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGC 106185 | ||||| || | || || ||||| || || | ||| || | |||| || Sbjct 2133 TGCAGGAGAGCCTTGGAAAGTTTCATAAGAGCCATTGGCAATGGCTAGTTCATTAGAGGC 2192 Query 106186 CTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATC 106245 |||||| | |||||||| | || ||||| || | | |||| | ||| |||||| Sbjct 2193 CTCCAGCGCCGCGTGATAGAGTGTCTCAAATATTTGTGAGTTCAATTTCTTCGCTTCAGG 2252 Query 106246 TGAATCAAATGCGTAGCGGCACAAAAT-AAATACATCCGCGAGACCTTGAACACCCAAAC 106304 ||||||||| | | || || | | ||| |||| || || |||||||| || | | Sbjct 2253 TGAATCAAACG-GAAGTTTCAGGATCTGAAAAGCATCGGCAAGTCCTTGAACCCCGATGC 2311 Query 106305 CAATAGG 106311 |||| || Sbjct 2312 CAATGGG 2318 >seq8479 Length=3538 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 7197 GATTGGGGTCACGCGAAGGACTATGTTGAAGCCATGTGGCTCATGCTTCAACAAGAGGAA 7256 |||||||| || || || ||||||||||||| ||||||| ||||||||||| || | Sbjct 1704 GATTGGGGACATGCTAAAGACTATGTTGAAGGCATGTGGAAAATGCTTCAACAGGACTCA 1645 Query 7257 GCCGACGAATATGTAGTAGCAACGGGTGAGACCCATTCAGTGAG 7300 |||| || | ||| | ||||| ||||| || |||||||| || Sbjct 1644 CCCGATGACTTTGTGCTCGCAACCGGTGAAACTCATTCAGTAAG 1601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589558159879160