Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq15031 215 6e-51 seq37735 190 2e-43 >seq15031 Length=1318 Score = 215 bits (238), Expect = 6e-51 Identities = 287/396 (72%), Gaps = 2/396 (1%) Strand=Plus/Plus Query 179889 CGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTT 179948 ||||| || || |||| || || | ||||| ||||| || || |||||||| || || Sbjct 923 CGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATT 982 Query 179949 CCTTCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCGCTTGAC 180008 ||| |||| || || ||| | || || ||||| || |||||||| ||||| |||| Sbjct 983 CCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCTATATGGGAAGCGGCATCCGTTGAT 1042 Query 180009 GAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATTGGCATC 180068 || ||| | || || || ||||||| |||| | || | |||||| | |||| | Sbjct 1043 GAATGGTTATACAATGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTA 1102 Query 180069 TATGCCTACATGGGTCGTGAGTGGGAACTTTCTTATCGCTTGGGTATGCGCCCCTGGATC 180128 | ||| ||||||||||||||||||||| || ||| |||||||||| || ||||| Sbjct 1103 GCTTGCTATATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGAT- 1161 Query 180129 TGC-GTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTT 180187 ||| || |||||||| ||||| || || || || ||||||| ||| | |||||||| | Sbjct 1162 TGCTGTTGCATATTCAGCTCCTGTTGCAGCGGCGACTGCTGTTTTCTTGATCTATCCTAT 1221 Query 180188 CGGTCAAGGTTCATTCTCTGACGCAATGCCCCTCGGCATTTCTGGCACCTTCAACTACAT 180247 ||||| || || || || | ||||| || || |||||||| || ||||| | || Sbjct 1222 TGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTAT 1281 Query 180248 GCTTGTTTTCCAAGCAGAGCACAACATCCTGATGCA 180283 | |||| || || || ||||| || || || ||||| Sbjct 1282 GATTGTATTTCAGGCTGAGCATAATATTCTTATGCA 1317 >seq37735 Length=758 Score = 190 bits (210), Expect = 2e-43 Identities = 264/362 (73%), Gaps = 6/362 (2%) Strand=Plus/Minus Query 181517 GGGGGCTGGCTCACTGGCACTACTTTTGTTACGTCGTGGTACACCCACGGATTGGCGTCT 181576 ||||| ||| |||| || || || ||||| || || ||||| || || |||||||| | Sbjct 360 GGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGT 301 Query 181577 TCCTACCTTGAGGG-TGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGAC-GCTA 181634 || || | || || ||| || ||| | || || || || || || |||||| | ||| Sbjct 300 TCTTATTTGGAAGGATGC-AACTTCTTAACCGCAGCAGTCTCCACTCCTGCTAATAGCT- 243 Query 181635 TGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAAGCTCAGGGCGATTTCGTCCGCTGGG 181694 | | || ||| | | |||| |||||||||||||| ||||| ||||| ||| ||| Sbjct 242 TAGCACACTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGT 183 Query 181695 TCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTCTTATCGGTT 181754 ||| | || || || ||| ||||||| || |||||||| || |||| | || |||| Sbjct 182 GTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGTT 123 Query 181755 TTATGCTCAGGCAATTTGAACTTGCTCG-TCTAATCGGAATCCGACCCTACAATGCGATT 181813 | ||| | | ||||||||||||||||| ||| || | | || || || ||||| ||| Sbjct 122 TCATGTTACGTCAATTTGAACTTGCTCGATCTGTTC-AATTGCGGCCTTATAATGCAATT 64 Query 181814 GCTTTTTCCGGTCCTATTGCTGTATTCGTCTCTGTATTTCTCATCTATCCTCTGGGACAA 181873 || || || ||||| |||||||| || || |||||||| || || ||||| ||||| || Sbjct 63 GCATTCTCAGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCAG 4 Query 181874 TC 181875 || Sbjct 3 TC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 609959534622360