Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq15031 188 8e-43 seq37735 125 8e-24 seq7182 114 1e-20 >seq15031 Length=1318 Score = 188 bits (208), Expect = 8e-43 Identities = 263/369 (71%), Gaps = 0/369 (0%) Strand=Plus/Plus Query 169570 TATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGACTACAC 169629 ||||| ||||| || || |||||||| || |||| | || ||||| || | || Sbjct 950 TATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCAT 1009 Query 169630 TTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGTCCTTAT 169689 || || || || |||||||| ||| | |||||||||||||| || ||||| ||||||||| Sbjct 1010 TTTTATCCTATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTAT 1069 Query 169690 CAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACAGTGGGAA 169749 | | | | | |||||| | ||||| | | || ||||| | |||||||| Sbjct 1070 GAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTATATGGGTCGTGAGTGGGAA 1129 Query 169750 CTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCT 169809 || | | | || |||||||||||||| ||||||||| || || || || | Sbjct 1130 CTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCA 1189 Query 169810 GCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATG 169869 || || ||||| ||||| | || || |||||||||| || || ||||||||| Sbjct 1190 GCGGCGACTGCTGTTTTCTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGTATG 1249 Query 169870 CCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAACATT 169929 || ||||| || || ||||||||||| |||||| | || || || || |||||||| ||| Sbjct 1250 CCTCTAGGAATTTCTGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATT 1309 Query 169930 CTAATGCAT 169938 || |||||| Sbjct 1310 CTTATGCAT 1318 >seq37735 Length=758 Score = 125 bits (138), Expect = 8e-24 Identities = 246/362 (68%), Gaps = 10/362 (3%) Strand=Plus/Minus Query 170622 GGTGGTTGGTTCTTAGGGACTACCTTCGTTACATCATGGTATACACATGGTGTTGCTTCC 170681 || ||||||||| ||| || ||||| || || ||||||||||| ||||| | || Sbjct 360 GGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGT 301 Query 170682 TCATATCTTGAGGGATGTAACTTCCTAACAGCAGCAGTTTCCACACCTGGCGACGCAATG 170741 || ||| | || ||||| |||||| |||| |||||||| ||||| |||| ||| Sbjct 300 TCTTATTTGGAAGGATGCAACTTCTTAACCGCAGCAGTCTCCACTCCTG-----CTAATA 246 Query 170742 GGT---CATAGTCTT--CTGTTCCTTTGGGGACCTGAAGCACAAGGTTCATTTGTTCGTT 170796 | | || | |||| |||| || ||||| ||||||||||| || ||| |||| Sbjct 245 GCTTAGCACACTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTT 186 Query 170797 GGTTACAACTCGGAGGTTTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAG 170856 ||| ||| | || ||| | |||| ||||| || | || || | || ||| | |||| Sbjct 185 GGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAG 126 Query 170857 GTTTCATGCTCAGACAATTTGAGATCGCAGGACTTGTAGGCATCAGACCTTACAACGCAC 170916 |||||||| | | |||||||| | || || ||| | | ||||| || ||| Sbjct 125 GTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGGCCTTATAATGCAA 66 Query 170917 TCGCATTCTCTGCTGTTATCGCAGTCTTCACTAGCATCTTTCTGATCTATCCACTAGGTC 170976 | |||||||| | | || || || || | | || || || |||||||| |||| Sbjct 65 TTGCATTCTCAGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTC 6 Query 170977 AG 170978 || Sbjct 5 AG 4 >seq7182 Length=4296 Score = 114 bits (126), Expect = 1e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 153262 TTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAA 153321 |||| ||| | |||||||||||| ||| ||||| |||||| |||| || ||||| || | Sbjct 458 TTGAAAATTCAAGTTGGTACACAAGTTATACTCCTTATCAACCTGAAATCTCTCAAGGCA 517 Query 153322 GATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAG 153381 || | ||| | ||| | || | ||||| | |||| || || | ||||| || | Sbjct 518 GACTAGAATCCTTAATTAACTTTCAAACTATGATCAGCTCTCTAACTCGTTTACCTATCG 577 Query 153382 CAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATGCTATTAGCATATA 153441 | ||||| |||||| | |||||||||||||| || || ||||| ||| ||| ||| || Sbjct 578 CTAACGCCTCTCTACTGGATGAAGCAACTGCCGCCGCTGAAGCTATGAGTTTATCATTTA 637 Query 153442 ATT 153444 ||| Sbjct 638 ATT 640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578797873670560