Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq15031 226 3e-54 seq37735 206 3e-48 >seq15031 Length=1318 Score = 226 bits (250), Expect = 3e-54 Identities = 291/398 (73%), Gaps = 4/398 (1%) Strand=Plus/Plus Query 168004 CGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTC 168063 ||||| || || |||| || || | ||||| ||||| || || |||||||| || | Sbjct 923 CGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATT 982 Query 168064 CCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGAT 168123 ||| ||||| ||||| || | || || ||||| || |||||||| ||||| | ||| Sbjct 983 CCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCTATATGGGAAGCGGCATCCGTTGAT 1042 Query 168124 GAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAGTCTTTCACTTCCTCATCGGTAT- 168182 || ||||| || || || ||||||| ||||| | || | |||||| | | ||| | Sbjct 1043 GAATGGTTATACAATGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTA 1102 Query 168183 -CTATGCATACATGGGACGTGAATGGGAACTTTCATATCGTTTAGGTATGCGTCCATGGA 168241 || ||| || ||||| ||||| ||||||||| | |||| | ||||||||||| |||| Sbjct 1103 GCT-TGC-TATATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGA 1160 Query 168242 TCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTGTATCCTT 168301 | ||||||||| || || || || || || |||| ||| || ||| | | |||||| Sbjct 1161 TTGCTGTTGCATATTCAGCTCCTGTTGCAGCGGCGACTGCTGTTTTCTTGATCTATCCTA 1220 Query 168302 TCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACA 168361 | ||||| || || || || |||| ||||| || ||||| || || || ||||| | | Sbjct 1221 TTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTA 1280 Query 168362 TGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCAT 168399 || | || || || |||||||| |||||||| |||||| Sbjct 1281 TGATTGTATTTCAGGCTGAGCATAATATTCTTATGCAT 1318 >seq37735 Length=758 Score = 206 bits (228), Expect = 3e-48 Identities = 275/378 (73%), Gaps = 8/378 (2%) Strand=Plus/Minus Query 169385 GCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTTGTTACTTCCTGGTACACC 169444 |||||| | || | || || ||| |||| |||||| | ||||| ||||| ||||| || Sbjct 375 GCCTATTTCGCCTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACT 316 Query 169445 CACGGACTCGC---TTCCAGTTACTTAGAAGGCGCTAACTTCCTCACTGCTGCTGTCAGT 169501 || ||| | || ||| ||| || ||||| |||||| | || || || ||| Sbjct 315 CATGGATTGGCAAGTTC---TTATTTGGAAGGATGCAACTTCTTAACCGCAGCAGTCTCC 259 Query 169502 ACACCTGCTGAC-GCTATGGGACACTCACTGCTCTTGCTATGGGGTCCAGAAGCACAAGG 169560 || |||||| | ||| | | |||||| || | || || |||||||| |||||||| || Sbjct 258 ACTCCTGCTAATAGCT-TAGCACACTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGG 200 Query 169561 CGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTTGTAGCACTTCATGGTGC 169620 ||||| || ||||||||||| |||||||| |||| ||||| || || || ||||| Sbjct 199 AGATTTTACCCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGC 140 Query 169621 ATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCACGTCTTATTGGCATCCG 169680 || | ||| || ||||||||| | | || |||||| | || || | || | || Sbjct 139 TTTCGGATTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCG 80 Query 169681 TCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTTGTCAGTGTCTTTCTTAT 169740 ||||||||||| ||||||||||| ||||| |||||||| ||||| ||| || ||||| Sbjct 79 GCCTTATAATGCAATTGCATTCTCAGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTAT 20 Query 169741 CTACCCACTTGGACAGTC 169758 || ||||| || ||||| Sbjct 19 TTATCCACTGGGTCAGTC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574062068655720