Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq15031 219 5e-52 seq37735 181 1e-40 >seq15031 Length=1318 Score = 219 bits (242), Expect = 5e-52 Identities = 289/397 (73%), Gaps = 4/397 (1%) Strand=Plus/Plus Query 163926 CGTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTT 163985 ||||| |||||| | || || || | ||||| ||||| || || |||||||| || || Sbjct 923 CGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATT 982 Query 163986 CCCTCGTCCAATGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGAT 164045 || | || || || ||| | || || || || || |||||||| |||||| ||||| Sbjct 983 CCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCTATATGGGAAGCGGCATCCGTTGAT 1042 Query 164046 GAATGGCTTTACAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATCG--GTA 164103 |||||| | ||||| || ||||||| |||| | || | |||||| | | | ||| Sbjct 1043 GAATGGTTATACAATGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTA 1102 Query 164104 TCTATGCATACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGA 164163 || ||| || |||||||||||||||||||| || ||||| |||||||||||||||| Sbjct 1103 GCT-TGC-TATATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGA 1160 Query 164164 TTTGTGTTGCTTACTCTGCACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTT 164223 || |||||| || || || || |||||||| || | || || ||| || |||||||| Sbjct 1161 TTGCTGTTGCATATTCAGCTCCTGTTGCAGCGGCGACTGCTGTTTTCTTGATCTATCCTA 1220 Query 164224 TCGGTCAAGGTTCGTTCTCTGACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACA 164283 | ||||| || || || || | ||||| || || || ||||| || ||||| | | Sbjct 1221 TTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTA 1280 Query 164284 TGTTGGTGTTCCAAGCAGAGCACAACATCCTGATGCA 164320 || | || || || || ||||| || || || ||||| Sbjct 1281 TGATTGTATTTCAGGCTGAGCATAATATTCTTATGCA 1317 >seq37735 Length=758 Score = 181 bits (200), Expect = 1e-40 Identities = 262/362 (72%), Gaps = 6/362 (2%) Strand=Plus/Minus Query 165287 GGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGGTATACTCACGGGTTGGCAAGT 165346 || |||||| | || || || || || | || ||||||||||| || ||||||||| Sbjct 360 GGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGT 301 Query 165347 TCCTATCTGGAGGG-TGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGAC-GCTA 165404 || ||| |||| || ||||| ||| | || || ||||| || ||||| || | ||| Sbjct 300 TCTTATTTGGAAGGATGCAA-CTTCTTAACCGCAGCAGTCTCCACTCCTGCTAATAGCT- 243 Query 165405 TGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGA 165464 | | || ||| | || | || ||||||||||| || || || ||||| | | ||| Sbjct 242 TAGCACACTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGT 183 Query 165465 TCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGTT 165524 ||| | || || || ||| ||||||| || |||||||| ||||||| |||| |||| Sbjct 182 GTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGTT 123 Query 165525 TCATGCTTCGTCAGTTTGAATTAGCACG-TCTCATCGGTATCCGTCCCTACAATGCTATT 165583 ||||| | ||||| |||||| | || || ||| || | | || || || ||||| ||| Sbjct 122 TCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGGCCTTATAATGCAATT 64 Query 165584 GCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAA 165643 || ||||| ||||| || |||||||||||| || || || || || || |||||||| Sbjct 63 GCATTCTCAGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCAG 4 Query 165644 TC 165645 || Sbjct 3 TC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556525839957960