Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq15031 199 5e-46 seq37735 131 2e-25 seq7182 109 6e-19 >seq15031 Length=1318 Score = 199 bits (220), Expect = 5e-46 Identities = 280/393 (71%), Gaps = 0/393 (0%) Strand=Plus/Plus Query 171964 GAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCA 172023 || || ||| | || ||| | | ||||| ||||| || || |||||||| || |||| Sbjct 926 GAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCT 985 Query 172024 TCATCAAACGCAATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAA 172083 | || || |||||| | || || || ||||| |||||||| ||| |||| |||||| Sbjct 986 ACTTCTGCGGCTATAGGTTTGCATTTTTATCCTATATGGGAAGCGGCATCCGTTGATGAA 1045 Query 172084 TGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCA 172143 ||||| |||||||| ||||||||| | | | | | |||||| | | ||| | | Sbjct 1046 TGGTTATACAATGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT 1105 Query 172144 GCATACATGGGAAGACAGTGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGT 172203 || ||||| | |||||||||| | | | |||||| | || ||||| | Sbjct 1106 TGCTATATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCT 1165 Query 172204 GTAGCATATTCAGCACCTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGT 172263 || ||||||||||| ||||| |||| || |||||| ||| | | ||||| | ||| Sbjct 1166 GTTGCATATTCAGCTCCTGTTGCAGCGGCGACTGCTGTTTTCTTGATCTATCCTATTGGT 1225 Query 172264 CAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTC 172323 ||||| || || ||||||||||| ||||| || || ||||| ||||| |||||| | Sbjct 1226 CAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATGATT 1285 Query 172324 GTGTTCCAAGCAGAGCATAACATTCTAATGCAT 172356 || || || || |||||||| ||||| |||||| Sbjct 1286 GTATTTCAGGCTGAGCATAATATTCTTATGCAT 1318 >seq37735 Length=758 Score = 131 bits (144), Expect = 2e-25 Identities = 216/310 (70%), Gaps = 10/310 (3%) Strand=Plus/Minus Query 173044 GGTGGTTGGTTCTTAGGAACTACCTTCGTTACATCATGGTATACACATGGTATTGCATCT 173103 || ||||||||| ||| || ||||| || || ||||||||||| ||||| | ||| | Sbjct 360 GGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGT 301 Query 173104 TCATATCTTGAAGGAGCAAACTTTTTAACAGCAGCAGTCTCCACACCTGGCGACGCAATG 173163 || ||| | |||||| ||||| ||||| |||||||||||||| |||| ||| Sbjct 300 TCTTATTTGGAAGGATGCAACTTCTTAACCGCAGCAGTCTCCACTCCTG-----CTAATA 246 Query 173164 GGT---CATAGTCTT--CTGTTCCTTTGGGGACCTGAAGCACAAGGTTCATTCGTACGTT 173218 | | || | |||| |||| || ||||| ||||||||||| || || |||| Sbjct 245 GCTTAGCACACTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTT 186 Query 173219 GGTTACAACTCGGAGGACTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAG 173278 ||| ||| | || || || |||| ||||| || | || || | || ||| | |||| Sbjct 185 GGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAG 126 Query 173279 GTTTCATGCTCCGTCAGTTTGAGATCGCAGGACTTGTAGGCATCAGACCTTACAACGCAC 173338 |||||||| | ||||| ||||| | || || ||| | | ||||| || ||| Sbjct 125 GTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGGCCTTATAATGCAA 66 Query 173339 TCGCATTCTC 173348 | |||||||| Sbjct 65 TTGCATTCTC 56 >seq7182 Length=4296 Score = 109 bits (120), Expect = 6e-19 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 157937 TTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAA 157996 |||| ||| | |||||||||||| ||| ||||| |||||| |||| || ||||| || | Sbjct 458 TTGAAAATTCAAGTTGGTACACAAGTTATACTCCTTATCAACCTGAAATCTCTCAAGGCA 517 Query 157997 GATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAG 158056 || | ||| | ||| | || | ||||| | |||| || || | |||| || | Sbjct 518 GACTAGAATCCTTAATTAACTTTCAAACTATGATCAGCTCTCTAACTCGTTTACCTATCG 577 Query 158057 CAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATGCTGTTAGCATATA 158116 | ||||| |||||| | |||||||||||||| || || ||||| ||| ||| ||| || Sbjct 578 CTAACGCCTCTCTACTGGATGAAGCAACTGCCGCCGCTGAAGCTATGAGTTTATCATTTA 637 Query 158117 ATT 158119 ||| Sbjct 638 ATT 640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587629942172240