Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq15031 248 1e-60 seq37735 192 7e-44 >seq15031 Length=1318 Score = 248 bits (274), Expect = 1e-60 Identities = 292/395 (74%), Gaps = 0/395 (0%) Strand=Plus/Plus Query 167229 CGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTT 167288 || || || ||| |||| || || | ||||| ||||| || || |||||||| || || Sbjct 923 CGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATT 982 Query 167289 CCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAACCCTCGAC 167348 ||| ||||| ||||| ||| | || || ||||| || |||||||| ||| || | || Sbjct 983 CCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCTATATGGGAAGCGGCATCCGTTGAT 1042 Query 167349 GAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTTCCTGATTGGCATC 167408 || ||||| |||||||| ||||||| |||| | ||| | |||||| | |||| | Sbjct 1043 GAATGGTTATACAATGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTA 1102 Query 167409 TATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATC 167468 | |||||||||||||||||||||||| || ||||| ||||||||||| ||||| Sbjct 1103 GCTTGCTATATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATT 1162 Query 167469 TGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTC 167528 ||||||||| || ||||| || || || || ||||||| ||| | |||||||| | Sbjct 1163 GCTGTTGCATATTCAGCTCCTGTTGCAGCGGCGACTGCTGTTTTCTTGATCTATCCTATT 1222 Query 167529 GGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATG 167588 ||||| || || || || | |||||||| || || |||||||| ||||| | ||| Sbjct 1223 GGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATG 1282 Query 167589 CTTGTCTTCCAAGCAGAGCACAACATCCTGATGCA 167623 |||| || || || ||||| || || || ||||| Sbjct 1283 ATTGTATTTCAGGCTGAGCATAATATTCTTATGCA 1317 >seq37735 Length=758 Score = 192 bits (212), Expect = 7e-44 Identities = 260/360 (72%), Gaps = 2/360 (1%) Strand=Plus/Minus Query 168576 GGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGGTATACTCACGGGTTGGCAAGT 168635 || |||||| | || || || | || || || ||||||||||| || ||||||||| Sbjct 360 GGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGT 301 Query 168636 TCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATG 168695 || ||| |||| || ||||| | || || ||||| ||||| || || | Sbjct 300 TCTTATTTGGAAGGATGCAACTTCTTAACCGCAGCAGTCTCCACTCCTGCTAATAGCTTA 241 Query 168696 GGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCACAAGGGGATTTCGTCAGATGGTGT 168755 | || ||| | || | || ||||||||||| ||||| || ||||| | | |||||| Sbjct 240 GCACACTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGTGT 181 Query 168756 CAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTC 168815 ||| | || || || ||| ||||||| || |||||||| ||||||| |||| |||||| Sbjct 180 CAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGTTTC 121 Query 168816 ATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCCTACAATGCTATTGC 168874 ||| | ||||| |||||||| || || ||| || | | || || || ||||| ||||| Sbjct 120 ATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGGCCTTATAATGCAATTGC 62 Query 168875 GTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATC 168934 ||||| ||||| || |||||||||||| || || || || || || |||||||| || Sbjct 61 ATTCTCAGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCAGTC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560206401451600