Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq37735 233 2e-56 seq15031 203 4e-47 >seq37735 Length=758 Score = 233 bits (258), Expect = 2e-56 Identities = 281/377 (75%), Gaps = 4/377 (1%) Strand=Plus/Minus Query 183259 GCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGGTATACC 183318 || ||| | ||| | || |||||| | || || ||| | ||||| || |||||||| Sbjct 375 GCCTATTTCGCCTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACT 316 Query 183319 CATGGACTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCTGTCTCGAC 183377 |||||| | || ||| ||| | ||||| ||| ||||| | || ||||| ||||| || Sbjct 315 CATGGATTGGCAAGTTCTTATTTGGAAGGATGC-AACTTCTTAACCGCAGCAGTCTCCAC 257 Query 183378 GCCTGCTGAC-GCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCAAGGGG 183436 |||||| | ||| | | || ||| | ||||||| ||||||||||| | || || | Sbjct 256 TCCTGCTAATAGCT-TAGCACACTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAG 198 Query 183437 ACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGTGCCT 183496 | ||| || ||||| ||| | || || || |||| |||||| || ||||||||||| | Sbjct 197 ATTTTACCCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTT 138 Query 183497 TTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTATCCGTC 183556 | | | || ||||||||| | || || |||||||||||||| | || | || | Sbjct 137 TCGGATTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGGC 78 Query 183557 CTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCT 183616 |||| ||||| ||||| ||||| ||||| |||||||||||||| |||||||||||| | Sbjct 77 CTTATAATGCAATTGCATTCTCAGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTT 18 Query 183617 ATCCACTGGGTCAGTCT 183633 ||||||||||||||||| Sbjct 17 ATCCACTGGGTCAGTCT 1 >seq15031 Length=1318 Score = 203 bits (224), Expect = 4e-47 Identities = 286/399 (72%), Gaps = 6/399 (2%) Strand=Plus/Plus Query 181935 CGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTC 181994 || || || || |||| || || | ||||| ||||| || || |||||||| || | Sbjct 923 CGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATT 982 Query 181995 CCATCCTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGAT 182054 || | || || || ||| | || || || || || |||||||| || || ||||| Sbjct 983 CCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCTATATGGGAAGCGGCATCCGTTGAT 1042 Query 182055 GAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATC 182114 || ||| | || || || ||||||| |||| ||||| | |||||| | | || | Sbjct 1043 GAATGGTTATACAATGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGG--TG 1100 Query 182115 TACGC---CTACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGG 182171 || || ||| ||||| ||||||||||||||| || || | ||||||||||| ||| Sbjct 1101 TA-GCTTGCTATATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGG 1159 Query 182172 ATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCT 182231 || ||| ||||| || ||||| || || || || ||||||| ||||| |||||||| Sbjct 1160 ATTGCTGTTGCATATTCAGCTCCTGTTGCAGCGGCGACTGCTGTTTTCTTGATCTATCCT 1219 Query 182232 TTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTAT 182291 | ||||| || || || |||| ||||| || ||||| || || || ||||| | | Sbjct 1220 ATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTT 1279 Query 182292 ATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGCAT 182330 ||| | || || || |||||||| || |||||||||||| Sbjct 1280 ATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCAT 1318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611257803924200