Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq8935 98.7 1e-15 >seq8935 Length=3822 Score = 98.7 bits (108), Expect = 1e-15 Identities = 173/252 (69%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 48386 ATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAAT 48445 |||||| | || | || ||| |||||||| ||||| || ||| ||||| || | ||| Sbjct 514 ATTGTTGAAGACCCGTAGCATAGGGACAATTCCATTAGAATAACCGTTGGTACCGGCAAT 573 Query 48446 ATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGA 48505 ||| |||||| | || | |||| ||| || || || ||||| || |||| || Sbjct 574 ATAGCTTCCAGTGGCACGAATATCGTGAATACTAAGTCCAATGCCACCAGCTGTTTTGGA 633 Query 48506 TATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATT 48565 ||| | ||||| || | ||| ||||||||||| ||| ||| | |||| | Sbjct 634 TATCATTGCACAGGTCTTTAAGGTGTCATAAATTCCACAAATAGAATCTGATTTCATGCT 693 Query 48566 TAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGA 48625 | || ||| || ||||| ||| ||||| |||||| |||||||| | ||||| || Sbjct 694 AATTAAAAAGCATGAAGACAATTGAGGATGCGGAGTTCCAGAATTAAAAAGCGTTGGGGA 753 Query 48626 TGCATGAATAAA 48637 ||||| |||| Sbjct 754 AGCATGGGTAAA 765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561706126334760