Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq6376 127 2e-23 seq7699 116 3e-20 >seq6376 Length=4460 Score = 127 bits (140), Expect = 2e-23 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| | ||||| ||| | || |||||||| ||||||||||| |||||||||| Sbjct 1082 AGCTGTCGGTATCGATCTCGGCACCACATACTCCTGTGTTGGTGTATGGCAAAATGACCG 1141 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||||||||| |||||||| || ||||| ||| | |||||||| || |||||| | ||||| Sbjct 1142 AGTTGAAATCATTGCCAACGACCAAGGAAACCGCACTACTCCTTCCTATGTTGCCTTCAC 1201 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 || ||||| || |||||||||| || || | |||| || || || ||| Sbjct 1202 TGACTCTGAAAGGTTGATTGGTGATGCTGCCAAGAACCAAGTGGCTATGAACCCACACAA 1261 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGG 550200 ||| | ||||| || || ||| | ||||| Sbjct 1262 CACTGTCTTTGACGCCAAGCGTCTCATTGG 1291 Score = 111 bits (122), Expect = 1e-18 Identities = 181/263 (69%), Gaps = 5/263 (2%) Strand=Plus/Plus Query 551894 AGCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTAC 551953 |||| |||| || ||||| | ||||| ||| |||||||||| |||| || |||| | | Sbjct 2025 AGCTGTTCGGCGATTAAGACCAGCTTGTGAACGAGCCAAACGCACTCTGTCGTCTGCTGC 2084 Query 551954 TCAAACCACTATTGAAGTAGATTCATTATTTGAGGGA-----ATTGATTATAATACGCCT 552008 |||||| | || ||| | || || || ||| || || | |||| | Sbjct 2085 TCAAACTTCCATCGAAATCGACTCTTTGTTTNNNNNNNNNNTATCGACTTCTATACATCG 2144 Query 552009 ATTTCGAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCA 552068 || | | || ||||||||| | || |||||||| || ||||| || || || Sbjct 2145 ATCACACGAGCTCGATTTGAAGAGCTCTGCCAAGATCTCTTCAGGAAAACTATGGAGCCT 2204 Query 552069 GTAGAACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTT 552128 || || |||| || || ||||| |||||||||||| | || || || ||||| || ||| Sbjct 2205 GTTGAGAAAGTCTTGAGGGATTCCAAGATTGATAAAGCTAACGTTCACGAAATAGTTCTT 2264 Query 552129 GTTGGTGGATCTACAAGAATTCC 552151 || ||||| ||||| | ||||| Sbjct 2265 GTCGGTGGTTCTACCCGTATTCC 2287 Score = 111 bits (122), Expect = 1e-18 Identities = 255/382 (67%), Gaps = 13/382 (3%) Strand=Plus/Plus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269 || || || || || |||||||||||||| || ||||||| || ||||| || || | Sbjct 2408 AACCCTGACGAAGCCGTTGCCTATGGTGCTGCTGTTCAAGCCGCCATTCTCTCAGGTGAT 2467 Query 552270 ACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTA 552329 || |||||| ||| | || | || | ||||| | |||||||| | ||| | Sbjct 2468 ACCTCGGAAAAAACCCAAGACCTTCTCCTCCTCGATGTCGCCCCTCTATCCATGGGTATT 2527 Query 552330 GAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAA 552389 ||||||| |||||| | | ||| ||||||| | | ||||| ||| ||||| | || Sbjct 2528 GAAACAGCGGGAGGTGTCTTTACTCCTCTTATCAAGCGCAATACCACTGTTCCTACT-AA 2586 Query 552390 AAATCTCGTGTATTTTCT--ACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTT 552447 ||| | | ||||||| || ||| | || |||||| ||| ||| |||||| | | Sbjct 2587 AAAGGGAGAG-ATTTTCTCCACCTATGCCGACAATCAACCTGGTGTATTGATTCAAGTGT 2645 Query 552448 TTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAG 552507 || || || | || ||||| || || | || || | || | | | Sbjct 2646 ACGAGGGTGAGCGTGCCCGTACCAAAGACAACAACCTTCTCGGCAAGTTCGAGCTTTCTG 2705 Query 552508 GTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCA 552567 |||| || || || |||||| |||||||| ||||| || ||| |||| |||| Sbjct 2706 GTATCCCACCAGCCCCTCGT---------CAAATTGAGGTTACCTTTGATGTCGACGCCA 2756 Query 552568 ATGGAATTTTGAATGTGACTGC 552589 ||||||| || |||||| |||| Sbjct 2757 ATGGAATCTTAAATGTGTCTGC 2778 Score = 89.7 bits (98), Expect = 4e-12 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| || || || ||||||||||| || || || || || || |||||||| ||| Sbjct 1622 ACTGTCCCTGCCTACTTTAATGACTCCCAGCGCCAGGCCACCAAGGATGCTGGTTTGATT 1681 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 | || ||||| ||||| || || || || ||||| || || || || |||| ||||| Sbjct 1682 TCGGGTCTTAACGTTCTCCGAATAATTAACGAACCAACCGCCGCCGCCATTGCTTATGGT 1741 Query 550529 CTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGGT 550582 || || || | | | ||| | ||||| || ||||||||| ||||||| Sbjct 1742 CTCGACAAGAAAACCCAGGGAGAGCGCAATGTCCTGATCTTTGATCTTGGAGGT 1795 >seq7699 Length=4151 Score = 116 bits (128), Expect = 3e-20 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 550316 TTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCT 550375 ||||| || || ||||||| ||||||| || || ||||| |||| || || Sbjct 343 TTTTCCCCTCAAGAAATTTCGGCTATGGTCTTGGCTAAGCTGAAAGAAACCGCTGAAGCC 402 Query 550376 TTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCA 550435 | || |||| || | | || || || || |||||||| |||||||||||||| Sbjct 403 AAACTCGGGAAAGAGGTGAAAAAAGCGGTTATCACCGTACCAGCTTATTTTAATGACTCC 462 Query 550436 CAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATC 550495 ||||| | | |||||||| || || ||||||||| ||| ||||||||||||| ||| Sbjct 463 CAACGATTATCAACTAAAGACGCCGGTGCTATTGCTGGTCTTGATGTTCTTCGTATCATC 522 Query 550496 AATGAACCTACTGCTGCTGCACTTGCATATGGACTTG 550532 || ||||| ||||| ||||| | || || || |||| Sbjct 523 AACGAACCAACTGCCGCTGCCATCGCTTACGGTCTTG 559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4026265241616410