Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq15031 215 2e-51 >seq15031 Length=1318 Score = 215 bits (238), Expect = 2e-51 Identities = 295/404 (73%), Gaps = 16/404 (4%) Strand=Plus/Minus Query 5641 ATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGAT 5700 ||||||||| ||||| || || ||||| ||||| | |||||| || ||||||||||| || Sbjct 1318 ATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAATTGAAAGTACCAGAAAT 1259 Query 5701 ACCAAGAGGCATACCATCACTGAAA--CTTCCCTGTCCGAAAGGGTATACTAAAAATACT 5758 || |||||||||||||| ||||| |||||||| || | ||| || | || || || Sbjct 1258 TCCTAGAGGCATACCATC--TGAAAAGCTTCCCTGACCAATAGGATAGATCAAGAAAACA 1201 Query 5759 G-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAA 5817 | ||| | | || ||||| || ||||||||||| || |||||| || ||||| || | Sbjct 1200 GCAGTCGCC-GCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAG 1142 Query 5818 TCTGTAACTAAGTTCCCATTGGCGTCCCA---AGTAAGCTGCGATACCAATAAGGAAGTG 5874 | ||||||||||||| | || |||| || ||||| | ||||| | |||||| Sbjct 1141 ACGAAAACTAAGTTCCCACTCACGACCCATATAGCAAGCTAC---ACCAAGTAAGAAGTG 1085 Query 5875 GAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGA--GATTGGCTGCT 5932 | || | |||| || || || |||||||| | ||||||||| | ||| || ||| Sbjct 1084 TAGAACAATTAGTTCATAAGGACCGCCATTGTATAACCATTCATCAACGGAT--GCCGCT 1027 Query 5933 TCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGAT 5992 ||||| || ||||| || || || || || || || | || | || ||| || || Sbjct 1026 TCCCATATAGGATAAAAATGCAAACCTATAGCCGCAGAAGTAGGAATAATGGCACCAGAA 967 Query 5993 ATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACG 6036 || || ||||||||||| ||||||||||| | || || ||||| Sbjct 966 ATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTCACG 923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152545715173374